Acipenser ruthenus (sterlet): 117966127
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Entry
117966127 CDS
T07327
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117966127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
arut03041
]
117966127
Enzymes [BR:
arut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117966127
Spliceosome [BR:
arut03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117966127
Complex C
U5 SnRNP specific factors
117966127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
117966127
NCBI-ProteinID:
XP_034767462
LinkDB
All DBs
Position
38:complement(3608685..3646277)
Genome browser
AA seq
2138 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKSQRTK
PQLLEERRAKRRKRDEDRYDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKMRDKERRKEVEQLLGPTDDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEVVDEDAYGEVRDEASDEDTEGEEADERCTL
TANLGAAGDVMSTKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKRADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKERIMSKMESDPELSKVL
YQLQETEKEDIIREERSRRERVRKSRMDNDLEAVDMDQQGESLAPRQVLDLEDLAFSQGS
HFMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFTEDEVLLPIEKLPKYAQAGFEGFKT
LNRIQSKLFKAAMDTDENLLVCAPTGAGKTNVALMCMLREIGKHINLDGTINVDEFKIIY
VAPMRSLVQEMVGSFGKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKG
GERTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNIEMSQEDVRLVGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMDHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEVVLGNVQSAKDAVNWLGYTYLYIRLLRNPPLYGVSHDEKIVDPLLERRRLDLVHTA
ALVLDKNNLIKYDKRTGTFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSL
SSEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTVNLCKMIDKRMWQSMSPLRQFRKLPEEVI
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLSVHLQPITRSTLKV
ELTITPDFQWDEKVHASSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNAEGRCVYIT
PMEALAEQVFADWYDKFQETLNKKVVLLTGETSTDLKLLGKGDIIISTPEKWDILSRRWK
QRKNVQNVSLVLIDETHLIGGDNGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSSTKPAI
VFVPSRKQTRLTAINILTFCASDVLPQRFLRCTEKDLAPFLEKLSDATLKETLANGVGYL
HEGLNPTERRIVEQLFNSGAVQVVVASRSLCWGMNISSHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGRANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVEHTLNDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYENIPI
RHHEDTLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAV
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPYFTSEHVKRCTDKGIE
SIFDIMEMEDEERSGLLQLSDSQIADVARFCNRYPNIELSYEVAEKDNVKSGSPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPALG
VHNYTLYFMSDAYMGCDQEYKFSVDVKEADSEGDSDSD
NT seq
6417 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttaccgctcgtagcctgcagtatgagtacaaggcgaactccaatcttgtc
ctgcaagcagaccgttctctgatcgaccgcacccggcgagatgagcccactggagaggtg
ctctccctggtggggaagctcgaggggacgaagatgggagacaaatcccagagaaccaaa
ccacagctgctggaggagaggcgggcaaagaggagaaaaagagacgaggacaggtatgac
atcaataaaatgaaggggttcacactgctgtcggagggcattgatgagatggtcgggata
gtctacaagccaaagacaaaggagaccagagaaacgtatgaggtcctgctcagcttcatt
caggctgctctaggagaccagccccgtgacatcctgtgtggagccgcagacgaggtcctg
gcagtgctgaagaatgagaagatgcgtgacaaggagaggcgcaaggaggtggagcagctg
ctgggccccacagacgacacgcgctaccacgtgctggtcaacctgggcaagaagatcagc
gactacggaggggacaaggagctgcagaacatggatgacaacattgatgaaacctatgga
gttaacgtacagtttgaatctgatgaagaggtggtggatgaggatgcgtatggagaggtg
cgggacgaggcctctgatgaagacacagagggagaggaggcagacgagcgctgtaccctc
actgccaatttgggtgcagccggagatgtgatgagcacaaaaaagaaggacctccacccc
agagatatcgatgccttctggcttcaaaggcagctcagccgtttctatgatgacgccatt
gtgtctcagaagagggcagatgaagtgctggagattttaaagactgccagtgatgacaga
gagtgtgagaatcagcttgtcctccttctgggcttcaacacctttgacttcatcaagatc
ctccggcagcacaggaggatgatccagtactgtaccatgctggccagtgcccagagcgag
gctgagaaggagagaatcatgagtaaaatggagtcagacccagagctttccaaggtcctg
taccaactgcaggagactgagaaagaagacatcattcgggaggagagatcccggagagag
agggttcggaagtcccgcatggataacgacctggaggccgtggacatggaccagcaggga
gagtcgctggccccccggcaggtgcttgacctggaagacctggccttctcacagggcagc
cacttcatggcaaacaagcgctgccagctccccgacggctccttcaggaagcagcgcaag
ggctacgaggaggtgcacgtgcccgccctcaaacccaaacccttcacagaggacgaggta
ctgcttcctattgagaagctccccaagtatgcccaggcagggttcgaagggtttaagact
ctgaaccgcatccagagcaagctgttcaaagcagccatggacactgatgagaacctgctg
gtctgtgccccaacgggagctggtaagaccaacgttgccctgatgtgcatgctgagggag
atcggcaaacacatcaacctggacggcaccatcaacgtggacgagttcaaaatcatctat
gtcgcccccatgaggtccctggtacaggaaatggtggggagctttgggaagcgcttggcg
agttacgggatcacggtgtcggagttgactggggatcaccagctgtgcaaggaggagatc
aacgccactcagatcattgtgtgcacccccgagaaatgggacatcatcaccaggaaggga
ggggagcgcacctacacccagctagtgcgcctcatcattatcgatgaaatccaccttctt
cacgatgaccgtgggccagtgctggagtctctggtggctcgaaccatccgcaacatcgag
atgagccaggaggacgtgcggctggtcggcctgagtgccacgctgcccaactacgaggac
gtggccaccttcctcagagtggacccggccaaggggctcttctacttcgacaacagtttc
cgtccagtacccctggagcagacatacgtcggcatcaccgagaagaaagccatcaaaaga
ttccagatcatgaacgagattgtctatgagaaaatcatggaccatgctggcaaaaaccag
gtgctggtgtttgtccactctcggaaggagactgggaagacagctcgagcgatcagggac
atgtgtctggagaaggacaccctgggtcttttcctccgggagggctctgcctccactgag
gtcctgaggactgaggctgagcagtgcaagaacctggagctgaaggatctccttccctac
ggctttgcgattcatcacgctggcatgacaagagtggacaggacgcttgttgaggatctg
tttgctgacagacacattcaggtgctggtgtcgactgccactctggcttggggtgtcaac
ttgccagcgcacaccgtcattatcaaagggacacaagtctacagccctgagaaagggcgc
tggactgagcttggggctttggacattctgcagatgctgggtagagctggtcgcccccag
tatgatacgaagggagaaggtatcttgatcacctcccatggtgagctgcagtactacctc
tccctgctcaaccagcagcttcccattgagagccagatggtctccaaactcccggacatg
ctcaacgcagaggtggtcctgggaaatgtgcagagcgcaaaggacgcagtgaactggctg
ggctacacctacctgtatatccgcttgctgcgtaaccctcccctctatggggtctcccac
gatgagaagattgtggaccccctgctggagcgccgccgcctggacctcgttcacactgcc
gccctcgtcctggacaagaacaacctgatcaagtacgacaagaggaccggcaccttccag
gtgacagacttgggccgtattgccagtcacttctacatcacccatgacagtatccagacc
tacaaccagctgctgaagcccacgctgagtgagatcgagctcttcagagtgttctccctc
tcctcggagttcaggaacatcaccgtgagagaggaggagaaactggaactccagaagctg
ctggagagagtccccattcctgtgaaggagagcattgaggagcccagtgcaaagatcaac
gtgctgctccaggcatacatctctcagctgaagctggaaggctttgctctcatggctgac
atggtttatgtaacgcagtcggcagggcggctgatgcgagcgatattcgagattgtgctg
aaccgcggctgggcccagctcaccgacaagaccgtcaacctctgcaagatgatagacaag
agaatgtggcagtcaatgtccccgttgcgtcagttcaggaagcttcctgaagaagtcatt
aagaagattgagaagaagaacttcccatttgagcgtctctatgacctgaaccacaatgaa
ataggagagttgattcgaatgcctaagatgggcaagacaatccacaagtacgtccaccag
ttccccaagctggacctgtctgtccacctgcagccaatcaccaggtccaccctgaaagtg
gagctgaccatcacacccgacttccagtgggacgaaaaggtgcacgcctcttcagaggca
ttctggatcctagtggaggatgtggacagtgaagtgatcctgcaccacgaatacttcctg
ctaaaggccaagtacgctcaggacgaacacctggtgaccttcttcgtgccggtctttgag
cctcttccaccccagtactttatccgcgtggtctccgaccgctggctgtcatgtgagacc
cagcttcctgtatcgttccgccacctgatcctgccagagaagtacccacctcccactgag
ctgctagacctgcagcccctgccagtgtctgccctgagaaacagtgcctttgagagcctc
taccaggacaagttccctttcttcaaccccatacagacacaggtgttcaatgcagtgtac
aacagcgacgacaatgtgtttgtgggcgccccgactggcagtgggaagaccatctgtgct
gagtttgccatcctgagaatgctgctgcagaacgcggaggggcgatgtgtctacatcacc
cccatggaggccctggcagagcaggtgtttgccgactggtatgacaagttccaggagacg
ctgaataagaaggtggtcctgctgactggagagaccagcactgacctcaagctgctgggg
aagggcgacatcatcatcagcacccctgagaagtgggacatcctgtcccggcgctggaag
cagcgcaagaacgtgcagaacgtcagcctggtcctcatcgacgagacgcacctcatcggg
ggggacaatgggcctgttttggaggtgatctgttcccgtatgcgttacatttcatcacag
attgagcgtccaatcagaatcgtcgctctcagctcctctctttccaacgccaaggatgtt
gcccattggctgggctgcagcaccacggcaacgtttaacttccacccgaacgtgaggccg
gtcccgctggagcttcacatccagggtttcaacgtgagccacacccagacacgcctgctg
tccatggccaagcctgtgtaccacgccatcatgaagcactcttccaccaaaccagccatc
gtgttcgtcccctcgcgcaagcagactcgcctcacagccatcaacattctcaccttctgt
gcctcagatgtcctgccacagaggttcctgcgctgcacagagaaggacctggctcccttc
ctggagaagctgagtgatgccaccctgaaggagactctggctaatggggtgggctacctg
cacgagggcctgaaccccaccgagcgcaggatcgtagagcagctcttcaattcgggtgct
gtgcaggtggtggttgcctctcgtagcctgtgctgggggatgaacatctcctctcacttg
gtcatcatcatggacacgcagtactacaatggcaagattcatgcgtatgtggattacccg
atctacgatgtcctgcagatggttgggagggcaaaccggcccctgcaggatgatgaaggc
cgctgtgtaataatgtgccagggatccaagaaggatttcttcaagaagttcctgtacgag
ccgctgccagtggagtctcacctggaccactgtatgcatgaccacttcaacgcagagata
gtcaccaagaccgtggagaacaagcaggacgctgtggactacctcacctggaccttcctg
taccggaggatgacccagaaccccaactattacaacctgcagggcatgtcacacaggcac
ttgtcggatcatctgtctgagctggtggagcacactctgaacgatctggagcagtccaag
tgcatcagcattgaggatgagatggacgtggcaccgctgaacctgggcatgattgcagcg
tattactacatcaactacaccaccattgagctgttcagcatgtctctgaacgctaagacc
aagatccgaggactcatcgaaatcatctccaatgcagcggagtacgaaaacattcccatc
cggcaccacgaggacactctcctccgccagctggctcagaaagtccctcacaagttgaac
aatcccaaattcaatgacccccatgtgaagacgaacctgctcctgcaggctcacctctcc
cgcatgcagctgagtgctgagctgcagtccgacactgaagagatcctcagcaaggcagtg
cgcctgatccaggcctgtgtggatgtcctttccagtaacggctggctgagccctgccctg
gctgccatggagctggcccagatggtgacccaggccatgtggtccaaggactcctacctg
aagcagctgccatacttcacctcggagcatgtcaagcgctgcacagataagggaatcgag
agcatcttcgacatcatggagatggaggatgaggagcgcagtgggctgctgcagctctcc
gacagtcagatagcagacgtggctcgcttctgtaaccgctaccccaacatcgagctctcc
tacgaggtggctgagaaggacaatgttaagagtgggagtcctgttgtggttctcgtgcag
ctagagagagaagaggaggtgactggacctgtcattgcgccactcttccctcagaaacgt
gaggaaggctggtgggtggtgattggagaccccaagtccaacagtctgatctccattaag
agactgactctgcagcagaaagctaaggtgaaactggactttgtcgccccagccctgggt
gtccacaactacacactgtacttcatgagtgacgcctacatgggctgtgaccaggaatac
aagttcagtgtggacgtgaaggaggctgacagtgagggagacagcgactctgactga
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integrated database retrieval system
