Acipenser ruthenus (sterlet): 117966497
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Entry
117966497 CDS
T07327
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117966497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117966497
03036 Chromosome and associated proteins [BR:
arut03036
]
117966497
Enzymes [BR:
arut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117966497
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117966497
mRNA degradation factors
5'-3' decay
Decapping complex
117966497
Chromosome and associated proteins [BR:
arut03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117966497
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
117966497
NCBI-ProteinID:
XP_034768473
LinkDB
All DBs
Position
42
Genome browser
AA seq
484 aa
AA seq
DB search
MSTARMETPVILGLSNQNGQLRGPVKPPGGPGGGGGGVTPTQQTNQIKNASVNNGNPYPA
QTPNSTIKPGDDWKKNLQVPTKDMRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKP
SPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQALVVVPTRELALQ
VSQISIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVSK
VQMIVLDEADKLLSQDFVQIMEEIIGTLAKNRQVLLYSATFPTSVQKFMSTHLQKPYEIN
LMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGY
SCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYL
HRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGSIDKSLYVAEYHSETGE
EDKL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgcgagaatggagacgccggtgattctgggtttgtccaatcagaatgggcag
cttcgaggccccgtgaagcccccagggggcccaggggggggtggcggaggggtgaccccc
acgcaacagaccaaccagatcaagaacgccagcgtgaacaatgggaacccctatccggca
cagacccccaacagcaccatcaagccaggtgatgactggaagaagaatttgcaagtccca
accaaggatatgagaatgaaaacttcggatgtgacggcgacaaaaggcaacgagtttgaa
gattactgcctgaagcgggagctgctgatgggaatatttgaaatgggctgggagaagcca
tcgcccatccaggaggagagcattcccattgcactgtctggtagggatattctggccaga
gccaagaacggcacaggaaagagtggagcctacctcatccccttactggaacgcatagac
ctgaagaaggactgcatacaagctttggtcgtggtccccaccagggagctggcgctgcag
gtcagccagatctccatccaggtcagcaagcacatgggcggagtcaaggtgatggctacc
acgggaggcaccaacctgcgcgatgacatcatgaggctggacgagactgtgcacgtggtg
atcgcaacaccgggccgcatcctggatctcattaagaagggggtggccaaggttagcaaa
gtgcagatgattgtactggatgaggcagacaagctgctctcccaagactttgtgcagata
atggaggagatcatcggcactctggccaagaacagacaggtcctgctgtactccgccacc
ttccccaccagtgtacagaaattcatgagcacgcacctgcagaagccctatgagattaac
ctgatggaggagctgaccctgaagggggtcacgcagtactatgcctacgtgacggagagg
cagaaggtgcactgtctcaacaccctgttctcacggctccagataaaccagtctataatc
ttctgtaactcgtcccagcgggtagagctgctggctaaaaagatttcccagctgggctac
tcctgtttctacatccacgctaaaatgaggcaggagcatcgtaaccgtgtgttccacgac
ttcaggaatggcctgtgtcgcaatctcgtttgcactgacctgtttactcgtggtattgac
atccaggctgtgaacgtggtgatcaacttcgacttccccaagctggcggagacgtacctg
caccgcatcggcagatccggccggttcgggcacctgggtctggccattaatctgatcacc
tacgacgaccggttcaacctgaagggcatcgaggagcagctgggcacggagatcaagccc
attcccggcagcatcgacaagagcctgtatgtggcggagtaccacagcgagaccggggag
gaggacaagctgtga
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