Acipenser ruthenus (sterlet): 117967076
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Entry
117967076 CDS
T07327
Name
(RefSeq) probable ATP-dependent RNA helicase DDX23
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117967076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
arut03041
]
117967076
Enzymes [BR:
arut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117967076
Spliceosome [BR:
arut03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117967076
Complex C
U5 SnRNP specific factors
117967076
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-GeneID:
117967076
NCBI-ProteinID:
XP_034770116
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All DBs
Position
48:3727774..3741177
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AA seq
830 aa
AA seq
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MAGVITDKKERSSSKERDKDKDKDKDKDKEKDKDRKRSRTRSRERERKASPSKDRKHHRS
RERKRSKSKSKSPDRDRRQKDKEREKDVKERERDRERDRDRSRRDREKDGHRRDRRKSRS
VSPKSKEARLKKEKDVKKEEEEKKKKEKAQPLSLEELLANKKAEEEAEAKPKFLSKAERE
AEAMKRREQEVEERRKLMDEERKRRRVFQDIGRKMLEDPQERERRERRERMERENNGNEE
DDGRQKIREEKDKGKELQAIKERYLGGVKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLY
KERHHVQLYGRGFIAGIDLKQQKREQSQFYGDLMETRRTLEEKEQEEVRLKKVRKKEAKQ
RWDDRHWSQKKLEEMIDRDWRIFREDYSITTKGGKIPNPIRNWKEYSLPPHILEVIDKCG
YKEPTAIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQGPY
AVILAPTRELAQQIEEETIKFGKPLGMRTVAVIGGISREDQGFKLRMGCEIVIATPGRMI
DVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEYIPVTNQKPDTDEAEDPEKMIM
NFGSGKHKYRQTVMFTATMPAAVERLARSYLRRPAVVYIGSAGKPHEKVEQRVFLMSEGE
KRKKLLDVLAKGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNL
KAGAKDILVATDVAGRGIDIHDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGIAVTFLTK
EDSTVFYDLKQAILESPVSACPPELANHPEAQHKPGTILTKKRREETIFA
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atggccggggttattacagataaaaaggagcgctcatcctccaaggagcgtgacaaggac
aaggacaaggacaaggacaaggacaaagagaaggacaaggatagaaagagatcaagaacc
cggtccagagagagggagcgcaaagcctctccgtccaaagacaggaagcaccaccgatcc
cgggaaaggaagaggtcaaagagcaagtcaaagtcacctgacagagatcgtcggcaaaag
gataaagaacgagagaaggatgttaaagagagagagcgggacagggagagagacagggac
aggagccggagagatcgtgagaaggatggacatcgacgggacagacggaagtccagaagc
gtctctccaaaatccaaggaagcccggttaaaaaaagagaaggatgtgaaaaaagaggaa
gaggaaaagaagaaaaaagaaaaggctcagcctctgtcgttggaggagctgctggctaat
aagaaggcagaagaggaagcagaagcaaagcccaagttcctctcgaaggcggagcgcgag
gccgaggcgatgaagaggagagagcaggaggtggaggagcggcggaagctgatggacgag
gagaggaagaggaggagggtattccaggacatcggcagaaagatgcttgaggacccgcag
gagagggagaggcgcgaacggagggagagaatggagcgagagaacaacggcaacgaggag
gacgacggcaggcagaaaatcagggaagagaaagacaagggcaaagagctgcaagctatc
aaggagcggtacctcgggggcgtcaagaagcgaaggaggacccgccatctgaacgacagg
aagtttgtgttcgagtgggacgcgtctgaagacacttccatcgattacaaccctctgtac
aaggagaggcaccacgtccagctgtacggccgcgggttcattgcagggattgacctgaag
caacagaagagggagcagtcgcagttctacggggacctcatggagactaggaggaccctg
gaggagaaggaacaggaggaagtgaggttgaagaaggtgcggaagaaggaggcgaagcag
aggtgggacgaccgtcactggtcccagaagaagctggaggagatgatcgacagggactgg
cgtatcttcagggaggactacagcatcaccactaaggggggcaagatccccaaccccatc
cgcaactggaaggagtactcgctgcccccgcacatcctggaggtcatcgacaagtgtggc
tacaaggaacccacagctatccagcgacaagccattcccatcggcttacagaacagagac
atcatcggtgtggctgagactggtagcggtaaaactgcagccttccttatccctctgctg
gtatggattacaactctacccaaaatagacagaatcgaggactcggatcagggtccctat
gccgtcatcctggctccgacccgtgagctggctcaacagatcgaggaggagaccatcaag
tttgggaagccactgggaatgcgaactgtggctgtgatcggaggaatctcccgcgaggac
cagggcttcaagctccggatgggctgcgagattgtgattgccacgccagggcgtatgatt
gacgtgctggagaaccgctacttggtgctgagtcgctgtacctacgtggtgctggatgag
gccgacaggatgattgacatgggcttcgagccggacgtgcagaagatcctggagtacatc
cccgtgaccaatcagaagccagacacggacgaggcagaagaccccgagaagatgatcatg
aactttgggtccggaaaacacaagtacagacagacggtcatgttcacggctacgatgccc
gcagcggtggagaggctggccaggagttacctgcgcagaccggctgtggtctacatcgga
tctgcaggcaagccccatgagaaggtggaacagagggtcttcctaatgtctgaaggagag
aagaggaagaagctgctggatgtcctggcaaagggcttcgaccctcccatcatcatcttc
gtcaaccagaagaagggctgtgacgtgctggcaaaatctctggaaaagatggggtacaac
gcttgtactttgcacggtggcaagggccaggaacagagagagtttgccctgtcgaatctc
aaggccggcgcaaaggatatcctggtagccacagacgtggctgggagaggtatcgacatt
cacgacgtgtctatggtgctcaactacgacatggccaagaatattgaagactatatccat
cgtattggccgtaccggcagagctggtaaaagtggcattgccgtcaccttcctcacgaag
gaggactcgaccgtgttctacgacctgaagcaggctatcctggagagcccagtgtcagcc
tgccctccggagctggcaaatcacccggaagcccagcacaaaccaggcaccatcctgacc
aagaagaggcgagaggagaccatcttcgcttga
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