Acipenser ruthenus (sterlet): 117973031
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Entry
117973031 CDS
T07327
Name
(RefSeq) protein patched homolog 1-like isoform X1
KO
K06225
patched 1
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
117973031
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Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
Motif
Other DBs
NCBI-GeneID:
117973031
NCBI-ProteinID:
XP_034779833
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Position
1:96358564..96412066
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AA seq
1457 aa
AA seq
DB search
MASAVNVSEQESRDPDLPRITRRTRGNRTTATATDLEYLQRPSYCDAAFALEQISKGKAT
GRKAPLWLRAKFQRLLFKLGCYIQRNCGKFLVVGLLIFGAFAVGLRAANLETNVEKLWVE
VGGRVNQELRYTRQKIGEEAMFNPQLMIQTPQEEGANVLTAEALRQHLDSAIQASRVHVY
MYNRQWKLEHLCYKSGELITEAGYMELIIENLYPCLIITPLDCFWEGAKLQSGIAYLPGK
PHLQWTNFDPLEFLGELKNLHHGVESWEMMLNKAEVGHGYMDRPCLNPADPDCPVTAPNK
NATGPLEVSRILSGGCHGLSKKYMHWQEELVVGGTTKNGSGKLLSAQALQTMFQLMTPKQ
MYEHLKGHNDVSHINWNEDKAAAILEAWQRRYVEAVQQSVALNSTQKVLTFTTTTLDDIL
KSFSDVSVIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSLI
GISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALT
SISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIF
CCFISPCANRVIQVEPQVYTDNGDGNRYSPPPAYSSHSFTHETQITMQSTVQLRTEYDPR
TQAYYTTAEPRSEVSVQPITTTNNNTNSTSSNSTAPENLNCQSPESTSSTRDLLSQVSDS
TFNCIEPPCTKWSLSSFAEKHYAPFLLKPTTKVLVIFLFLGLLGVSLYGTTCVRDGLELT
DIVPRETREYDFIAAQFKYFSFYNMYVVTQKADYANTQALLYDLHKRFGTVKYILREDNG
QLPRMWLHYFRDWLQGLQDAFDSDWEAGKITYNNYNNGSDDGVLAYKLLVQTGNRDKPIN
FNQLTKQRLVDADGIINPNSFYSYLTAWVSNDPVAYAASQANIRPHPPEWFHEKADYVPK
TRLNIPAAEPIEYAQFPFYLNGLQETPQFVEAIERVRTICNNYSDQGVPNYPNGYPFLFW
EQYIGLRHWLLLSISVVLACTFLVCALLLLNPWTAGIIVLVLSLMTVELFGMMGLIGIKL
SAVPVVILIASVGIGVEFTVHVALAFLTSIGDQNRRAVLALEHMFAPVLDGAVSTLLGVL
MLAGSEFDFIVRYFFAVLAILTVLGVLNGLVLLPVLLSYFGPYPEVSPTDGRSRLPTPSP
EPPPRIVRFTVHPNHVTNGSDSSDSEYSSQTTVSGISDELHLYEGGQSNAHPTHQIMVEV
PENSGFPRSTVVQPMYHQPRTRLQPHPPEDRPQQAWRSSRDPRRESTRDSQQQQHHQQHQ
HQAPPHRPRVDAFETSTQGHSGPSNRDRSGHRSRSHNTRHPLFTPTGASVPAYCQPITTV
TASASVTVAVHSSLPGQNPPYRGFPSREGYQETDQAPFEDPHVPFNVHSERRGSKVEAME
LQDVECETNGGGGSNAR
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggctgttaatgtttcggagcaggaaagcagggaccctgatctgccgaggata
acaaggaggaccagggggaatcgcacaacagccacagcaactgatttggagtatctacaa
cggccaagctactgcgatgcagcttttgcattggaacagatatcaaaggggaaagctact
ggaagaaaagcaccgttgtggctgagagcaaagtttcaaagactcttatttaaactgggc
tgttacattcaaaggaactgtggaaagtttttagttgtgggcctcttaatatttggggcg
ttcgctgttggattaagagcagctaatcttgaaaccaacgtggagaaactgtgggtggaa
gttggaggaagggtgaaccaggagttaagatacacgcggcagaagataggagaagaggcc
atgttcaatcctcagcttatgattcagactcctcaggaagaaggtgctaatgtgttaaca
gctgaagctctgagacagcacctggactctgcaattcaagcaagcagagttcatgtttac
atgtataataggcaatggaaattggaacatctgtgctacaaatcaggagaactaattact
gaagctggttacatggagctgattattgaaaacctgtatccttgtttaataatcacaccg
ttagactgcttttgggaaggtgctaaattacagtccggaattgcctacctaccaggtaaa
ccacatttgcagtggacaaactttgaccctttggaattcctaggggagctgaagaacctc
catcatggagtggagagctgggagatgatgctgaacaaagcggaggttggacatggctac
atggaccgtccctgtcttaaccctgcagaccctgactgtccagtcacagcccccaacaag
aacgccactggacctcttgaagtttcccggatcctgagcggtggttgtcatggtctatcc
aagaagtacatgcactggcaggaggagctggttgttgggggaacaacaaagaatggcagt
ggaaaacttctaagtgcgcaggctttacagaccatgtttcagttaatgacgcccaagcag
atgtatgaacatttgaagggtcataatgatgtttcgcatatcaactggaatgaggacaaa
gctgccgcaattctggaggcttggcaaaggagatatgttgaggctgttcaacaaagtgtt
gcactgaactccactcagaaggtgcttacgttcacgactactactttggacgacatcctc
aagtcattctctgatgtcagtgttatccgagtggccagtggttacctattaatgcttgcc
tatgcctgtttaaccatgctacggtgggactgcgccaagtcccaaggtgccgtggggctg
gcaggagtcttgttggttgcattgtcagtggctgcaggattgggcctgtgctctttgatt
ggaatttcatttaatgctgcaacaactcaggttttgccatttcttgctcttggagttgga
gtggatgatgtcttccttttggcacatgcatttagtgagacgggacagaataaaagaatt
cctttcgaggaccggacaggagaatgtttgaagagaactggagctagtgtggctcttacc
tctattagcaatgtgactgcttttttcatggctgccctaatccctattcctgctcttcgg
gcattttccctccaggccgctgttgtggtggtgttcaactttgctatggttctgctcatc
ttcccggctattctcagcatggacctttaccgacgggaagacaggaggcttgacattttc
tgctgtttcataagcccttgtgcaaacagggtgattcaggttgaaccccaggtctacaca
gataacggtgacggcaatcgctacagtcccccgcctgcctacagcagccacagcttcaca
cacgagacccagatcaccatgcagtccactgtccagctccgcacagagtatgacccacgc
acccaggcctactacaccactgcagagccccgctccgaggtctccgtgcagcccatcacc
accaccaataacaatacaaacagcacgagcagcaacagcactgcacccgagaacctcaac
tgtcagagcccagagagcaccagctctacccgagacctgctctcccaggtctcagactcc
acttttaactgcatagagccaccatgcacgaaatggtcactttcttccttcgctgaaaag
cactacgccccctttctgttaaaaccaaccacaaaggttttggtgatatttctttttctg
ggtttactcggagtcagcctgtacggaaccacctgcgtccgagacggcctggagctgaca
gatattgtgcctcgggaaacgagggagtacgacttcattgcagctcagttcaagtacttt
tctttctacaacatgtacgttgtaacacaaaaggcagactatgcgaacactcaggccctg
ctctatgacctgcacaaacgcttcggcactgtgaaatacatcttacgggaggataatgga
cagcttcccagaatgtggctgcattactttcgagactggttacaaggtttgcaagatgcc
tttgacagtgactgggaagctggtaaaattacctacaacaactacaacaatggatctgat
gatggtgtactggcttacaagctgctggtacaaacgggcaacagggataaaccgatcaac
ttcaaccagttgacgaaacagaggcttgtagatgctgatggaatcataaaccccaattcc
ttctacagctacctgactgcctgggtcagcaatgatcctgtggcctacgctgcctcacag
gccaacatccgtccacatcccccagagtggtttcatgaaaaggccgactatgtgcctaag
accagactgaacattcctgctgcagagcctatcgaatatgctcagtttcctttctacctc
aatggactacaagagacaccccagtttgtggaagcgatcgagagggtcaggacaatctgt
aacaactacagtgaccagggggtgcccaactatcccaatggctaccccttcctgttctgg
gagcagtacatcggcctgcgccactggctgctcctctccatcagtgtggtgctggcctgc
accttcctggtgtgtgccctcctcctactcaacccctggactgctggtatcatcgtgctg
gtcttgtccctgatgactgtagagctgtttggaatgatggggctgattggaatcaaactg
agtgcagtcccagtggtcatcctcattgcttctgtgggaatcggagtggagtttacagtt
catgttgctctggccttcctaacctccattggggaccagaaccgcagagctgttctagca
ctagaacacatgtttgcacctgtgctggacggcgctgtatctacactgcttggggtgctg
atgcttgccgggtctgaattcgacttcattgtcaggtatttctttgctgtactggcaatc
ctgactgtgttaggtgttctgaacggattggtgctacttcctgttctgttgtcatatttt
gggccgtatcctgaggtttctccgactgatggaaggagccggctgcccaccccatctcct
gagccacctcctcgcatcgtgaggttcacggtccaccccaaccacgttaccaatggctcc
gattcgtcagactcggagtacagttctcagaccacggtatcagggatcagtgatgagctc
cacctgtacgagggaggccagagcaatgctcatcccacacaccagatcatggtggaggtc
ccagagaactctggcttccccaggtccactgttgttcagccgatgtatcaccagcccaga
accagacttcagcctcatcctccagaagatcgaccccagcaagcctggagaagcagcagg
gacccaaggagggagtcgacaagggacagccagcagcagcagcatcatcaacaacatcaa
catcaggcacctcctcaccggccgcgcgtggacgcttttgaaacttctactcaagggcat
tctggccctagcaatagggaccgctcgggacatcgctcccgctctcacaacactagacac
ccgcttttcactcccacaggtgcttccgtgccagcgtactgccagcctatcactactgtg
actgcctcagcctcggtcaccgtggctgtgcactcctccctgcccggacagaacccccct
tacagggggttcccgtcacgtgaggggtaccaagagactgaccaggcaccattcgaagac
ccccatgtgccttttaatgtccacagcgagagaaggggctcgaaagtggaggctatggag
ctgcaggacgtagaatgtgaaacgaatggtggaggcggcagcaatgcaagataa
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