Aeromonas rivipollensis: C7N77_05620
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Entry
C7N77_05620 CDS
T05453
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
arv
Aeromonas rivipollensis
Pathway
arv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
arv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C7N77_05620 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arv03021
]
C7N77_05620 (rpoC)
03400 DNA repair and recombination proteins [BR:
arv03400
]
C7N77_05620 (rpoC)
Enzymes [BR:
arv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C7N77_05620 (rpoC)
Transcription machinery [BR:
arv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C7N77_05620 (rpoC)
DNA repair and recombination proteins [BR:
arv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C7N77_05620 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AVP92729
UniProt:
A0AAP4N4K5
LinkDB
All DBs
Position
1150897..1155201
Genome browser
AA seq
1434 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDSIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIEPGMTNLERSQMLSEENYLDALEEWGDEFDAKM
GAEAILALLRAIDLEGEVKTMREELDQTNSETKRKKTTKRLKLMEAFLQSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLESRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRARINAKGEGMVLAGPKEAEKVYRAG
LADLHARVKVRITEYLRQEDGSLLPHTEMKNTTVGRAILSLILPKGMEYALIDEPKVLTA
AEQADLDANPQNWIKSVSNKALGKKLISRLLNTCYRKQGLKDTVIFADQLMYTGFHYAAL
SGASVGIDDMVIPDAKKDIIAAAEAEVAEIQDQFLSGLVTAGERYNKVIDIWASANDRVS
KAMMDNLSKERNVNSLGEEEEQASFNSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSI
IETPIVANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDMVITEDDC
GTTEGLWMTPLIEGGDVVEPLRERVLGRVVAEDVIKPGTESEILVARNTLLDEYLCDLLE
RNSVDRVKVRSAITCETDFGNCAHCYGRDLARGHLVNKGEAVGVIAAQSIGEPGTQLTMR
TFHIGGAASRAAAESSIQVKNTGSIKLQNAKFVTNSADKLVITSRSTELTIMDEMGRTKE
SHKLPYGSVLEVKDGQAVSAGDTVANWDPHTHPIITEVAGRLDFEHMIDGVTITRQTDEL
TGLSSIVVLDVNERPSAGKEMRPTVKLVDQNGKDVMIPGTDVAAQYFLPGKAIVNLEDGA
NVGVGDAVARIPQESSGTKDITGGLPRVADLFEARQPKEPAILAEISGTISFGKETKGKR
RLVITPTDGGDIYEEMIPKWRHLNVFEGEKVEKGEVLADGPESAHDILRLRGISPVANYI
ANEVQDVYRLQGVKINDKHIEVIVRQMLRKCEILSAGDTDLIEGEQVEVARVKIANRKLV
AEGKTPATFRHILMGITKASLSTESFISAASFQETTRVLTEAAVGGKRDELRGLKENVIV
GRLIPAGTGFAYHHARINQRAAAARAVGVPQVTADEAQQNLADLLNAAGSFDEE
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactcaagtttttgaaggctcagaccaagaccgaagagtttgacagtatc
aagatcggtctggcctctcctgacatgatccgctcctggtcattcggtgaggtcaaaaag
cctgagaccatcaactaccggactttcaagccggaacgtgatggtctgttctgcgcccgt
atcttcggaccggtgaaggactacgagtgtctgtgcggcaagtacaagcgcctgaaacac
cgtggtgtgatctgcgagaagtgcggcgtagaagtgacccagaccaaggtccgtcgcgag
cgcatgggccacatcgagctggccagcccgactgcccacatctggttcctgaagtccctg
ccgtcccgtatcggtctgctgctggacatgaccctgcgtgacatcgagcgcgtgctgtat
ttcgaatcctatgtagtgatcgaacccggcatgaccaacctcgagcgcagccagatgctg
tccgaagagaactatctggacgcactggaagagtggggcgacgaattcgacgccaagatg
ggtgccgaagcaatccttgcattgctgcgtgccatcgatctggaaggtgaagtcaagacc
atgcgcgaggagctggatcagaccaactccgagaccaagcgcaagaagaccaccaagcgc
ctgaagctgatggaagccttcctgcagtccggcaacaagccggagtggatgatcatgaca
gtgctgcctgtgctgccgccggacctgcgtccgctggtaccgctggacggcggccgtttc
gcgacttccgatctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgcctgaag
cgtctgctggatctggcggcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcaa
gagtccgtggatgccctgctggataacggccgtcgtggtcgtgccatcacaggttccaac
aagcgcccgctgaaatccttggccgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctgggtaaacgtgtcgactactccggtcgttccgttatcaccgtaggtccgacc
ctgcgtctgcatcagtgcggtctgccgaagaagatggcgctcgagctgttcaagcccttc
atctatggcaagctggaatcccgtggtctggcgaccaccatcaaggccgccaagaaaatg
gtggagcgcgaagaagcagtcgtttgggacatcctggacgaagtgatccgcgaacacccg
gtcctgctgaaccgtgctccgaccctgcaccgtctgggtatccaggcgtttgaaccgacc
ctgatcgaaggcaaggccatccagctgcacccgctcgtctgtgccgcctataacgcggac
ttcgatggtgaccagatggcggtccacgtaccgctgaccctggaagcccagctggaagcg
cgcgccctgatgatgtctaccaacaacatcctgtcgcctgcctccggtgagccgatcatc
gttccttctcaggacgtggtcttgggtctgtactacatgacccgtgctcgtatcaacgcc
aagggcgaaggtatggtgctggccggcccgaaagaagccgagaaggtctatcgcgccggt
ctggccgatctccatgctcgtgtgaaagtgcgtattaccgaatacctgcgtcaggaagac
ggttccctgctgccgcacaccgagatgaagaacaccacagttggtcgtgcgatcctgagc
ctgatcctgccgaaaggcatggaatacgcgctgatcgacgaacccaaggtgctgactgcc
gccgagcaggccgatctggatgccaatccgcagaactggatcaaatccgtatccaacaag
gcgctgggcaaaaagctcatctcccgtctgctgaacacctgctatcgcaagcagggcctg
aaggacaccgtcatcttcgctgaccagctgatgtataccggtttccattacgcggccctg
tccggtgcttccgttggtatcgatgacatggtcatcccggatgccaagaaagacatcatt
gcggcagccgaagccgaagtcgccgagatccaggaccagttcctgtccggtctggtgacc
gcgggcgaacgctacaacaaggttatcgatatctgggccagcgcgaacgatcgcgtctcc
aaggccatgatggataacctctccaaggagcggaacgtcaactccctgggtgaagaagaa
gagcaggcctccttcaacagcatcttcatgatggccgactctggtgcgcggggctccgcc
gcccagatccgtcagctggccggtatgcgtggcctgatggccaagccggatggttccatc
atcgaaacgccgatcgtggcgaacttccgtgaaggtctgaacgtactgcagtacttcatc
tccactcacggtgctcgtaagggtctggcggataccgcactgaagacggcgaactccggt
tacctgactcgtcgtctggttgacgtggctcaggacatggtgatcaccgaggacgattgc
ggcactaccgaaggtctgtggatgactccgctgatcgaaggtggtgatgtggtcgagccg
ctgcgtgagcgcgtgctgggtcgtgtggtcgccgaagacgtgatcaagccgggtactgaa
agcgagatcctggtcgcgcgcaatactctgctcgacgagtatctgtgtgacctgctggag
cgtaactccgtcgaccgcgtgaaggtacgttctgccatcacctgtgagaccgacttcggt
aactgtgcccactgctacggccgtgatctggcccgtggtcacctggtgaacaagggtgag
gctgtcggtgttatcgccgcccagtccatcggtgagccgggtacccagctgacgatgcgt
accttccacatcggtggtgccgcatcccgagctgctgccgagagcagcatccaggtcaag
aacaccggtagcatcaagctgcagaacgccaagtttgttaccaacagtgcagacaagctg
gttatcacctcccgttctaccgaactgaccatcatggacgagatgggccgtaccaaggaa
agccacaagctgccttacggttccgtcctggaagtgaaagatggccaggccgtgagtgcc
ggtgataccgtcgccaattgggatccgcacacccacccgatcatcaccgaagtagcaggt
cgcctggacttcgaacacatgatcgacggtgtgaccatcactcgtcagaccgacgagctg
accggtctctcctctatcgtcgtgctggatgtcaacgaacgtccgagcgccggtaaagag
atgcgtccgaccgtgaagctggtcgaccagaacggcaaggatgtcatgatcccgggtacc
gatgttgccgcccagtacttcctgccgggcaaggcgatcgtgaacctggaggatggtgcc
aacgtgggcgtgggtgacgcggtcgcgcgtatcccgcaagagtccagcggtaccaaggac
atcaccggtggtctgccgcgcgttgcggatctgttcgaagcacgtcaaccgaaggaaccg
gctatcctggccgagatctccggtaccatctccttcgggaaagagaccaagggcaaacgt
cgtctggttatcaccccgaccgacggtggcgacatctacgaagagatgattccgaagtgg
cgtcacctgaacgtgttcgaaggtgaaaaagttgagaagggtgaagtgctggcagacggt
cctgagtctgctcacgacatcctgcgtctgcgcggtatcagcccggtcgccaactatatc
gccaacgaagtgcaggacgtttaccgtctgcaaggcgttaagatcaacgacaagcacatc
gaagtcatcgttcgtcagatgctgcgcaagtgcgagatcctgagcgctggcgacactgac
ctgatcgaaggcgagcaggttgaagtggctcgtgtgaagattgccaaccgtaagctggtt
gccgagggtaagactccggccaccttccgtcacatcctgatgggtattaccaaggcatcc
ctgagcaccgagtccttcatctccgcggcttccttccaggaaaccactcgcgttctgacc
gaagcggccgttggcggcaagcgtgatgaactgcgtggcctgaaagagaacgtgatcgtg
ggtcgtctgatcccggctggtaccggctttgcctaccaccatgcccggatcaaccagcgt
gccgccgcagcccgtgctgtcggtgtaccgcaggtgactgccgatgaggctcagcaaaat
ctggcggatctgctcaacgcagccggcagttttgacgaagagtaa
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