Aeromonas rivipollensis: C7N77_14300
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Entry
C7N77_14300 CDS
T05453
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
arv
Aeromonas rivipollensis
Pathway
arv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7N77_14300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arv03019
]
C7N77_14300
03009 Ribosome biogenesis [BR:
arv03009
]
C7N77_14300
Enzymes [BR:
arv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C7N77_14300
Messenger RNA biogenesis [BR:
arv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C7N77_14300
Ribosome biogenesis [BR:
arv03009
]
Prokaryotic type
rRNA processing factors
C7N77_14300
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AVP94231
LinkDB
All DBs
Position
3081689..3084838
Genome browser
AA seq
1049 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSGLTVPDGMGLIVRTAGVGKSPEEL
EWDLNVLLNHWDSIHKASQNRSAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERA
KSHIELVRPDFLNRVKLYKGDVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RLREAVHQDRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLAL
SILRLIEEEAMKDNTEQVHGQVPVDVAAYLLNEKRASIASLEQRNDVRVYIIPNQHLETP
HYEVTRIRQNEIPEAASYELKTEIAKPVYQPKQAQVIEREQPLLQGFVQAPQPAAPVAAP
APVAAPTPVAAEAGLFGKLFKAISGLFGSDAAPAEAKAAAEKPAAQREARKDEGHRHQRD
ETRSRGQRGRRDDNRSNRNPADAGEKREGAANREGGESRNRRPRKEREPRQEREPRGEVR
SEQRMEREPREARNEPRADREPREPRQEREPRAPRPAREPRAPREPRAEVVVEAVETVET
TAVSTEPRQEKEQKVAERRERRQLRKQVRVDVAATDTPALPVDEQAHDLVETAAVVGEQE
EQTDGQRRSRRTPRSQRIEGQRRKRINEDARGQRDDEPQAEVQLTTAAQADAAQVKVEEP
AVPVITIPSAEAVAAALQASAALTEHVVAEAVAEEAHEQAQAAVAEVAAPVVAEVVEAPV
AIEAAPVAIEAAPVAAEPVAEVVIEEAPVVVEASIADQAVVEAAPVVVEPAPAPQAEEVI
SAAEPVAPVVAQPEPVVAPATKPVAKGAGVLARARKASAPMATPAAVPAPAPREPVEQAP
LERSEVASSGRHGGSTAAVNVATSPAGRP
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaacgcgactcaggaagaggagttgcgcgtagcgctggttgac
ggacaacagctctacgatttggatattgaaagtccgggacacgagcagaagaaagcgaac
atttacaagggtaagatcacccgcgtagaacccagtcttgaagctgcttttgttgactat
ggcgccgagcgccacggtttcctgccgttaaaggaaatcgcccgcaattacttcccctcc
ggttactcctatcagggtcgtcccaacatcaaagaagtggtccgcgaaggccaggaagtg
atcgtccagattgacaaggaagagcgtggcaccaagggtgcggccctcaccaccttcatc
agtctggccggcagctacctggtgctgatgccgaacaacccccgtgctggcggtatttcc
cgtcgtatcgagggtgacgagcggaccgagttgaaagaagccctgagcggactgacagtg
ccggacggtatgggcctcatcgtgcgtaccgccggtgtgggcaaatccccggaagagctg
gaatgggatctgaacgtcctgctcaaccactgggactccatccacaaggcatcacagaat
cgctccgcacccgtgctcatccaccaggagagcaacgtcatagtgcgtgcgattcgtgac
tatctgcgtcgcgatgtgggcgagatcctgatcgacaatccggtcatcttcgagcgtgcc
aagtcgcacatcgagctggttcgccccgatttcctcaatcgcgtgaagctgtacaagggt
gatgtcgccctgttcaaccacttccagatcgagagccaaatcgagtctgccttccagcgt
gaagtgcgcctgccctccggcggcagcatcgtcatcgatccgaccgaagcgctgacctcc
atcgatatcaactcctcccgcgccaccaagggcggcgatatcgaagagacggcgctgcag
accaacctggaagcagccgacgaaattgcccgtcaattgcgtctgcgtgacttgggtggc
ctgattgtcatcgacttcatcgacatgacgccggttcgccatcagcgcgaagtggaaaac
cgtctgcgtgaagctgtccatcaggacagggctcgcatccagctgggccggatctcccgt
ttcggtctgctggagatgtctcgccagcgtctgcgtccctccctcaacgagtccagcagc
cacatctgcccccgttgccagggtcagggtgtcatccgtgacaatgaatctctcgccctg
tccatcctgcgtctcatcgaagaagaggccatgaaggacaacactgagcaggttcacggc
caggtgccggtcgatgttgccgcctatctgcttaacgagaagcgtgcctccatcgccagt
ctggaacagcgcaatgatgtccgtgtttacatcattccgaaccagcatctggaaaccccg
cactacgaagtgacccgcatccgtcagaacgagatcccggaagcggccagctacgagctg
aaaaccgagattgccaagccggtctaccagcccaagcaagctcaggtcatcgagcgcgag
cagccgctgctgcaaggcttcgtccaggcgcctcaaccggctgcccctgttgccgccccg
gcccccgtcgcagcaccgacaccggtcgccgccgaagcgggtctgtttggcaagctgttc
aaggccatctccggtctgtttggctcagacgcagctccggctgaagcgaaagctgctgcc
gagaagccggccgcacaacgggaagcgcgcaaggatgagggtcaccgtcatcaacgtgac
gaaacccgcagccgtggccagcgtggtcgtcgcgacgacaaccgcagcaaccgcaacccg
gccgacgccggcgagaagcgtgaaggcgcagccaaccgcgagggtggcgagagccgcaac
cgtcgtccgcgtaaagagcgcgagccccgtcaggagcgtgaaccccgtggtgaagtgcgc
agcgaacagcgcatggaacgtgagccccgcgaagcacgcaacgagccgcgtgcggatcgc
gaaccccgtgagccccgtcaggaacgtgaaccccgcgccccgcgcccggctcgcgaaccc
cgtgctccgcgcgagccccgtgccgaggtcgtggttgaagcggtagaaaccgtcgagact
actgccgtcagcaccgaaccgcgtcaggaaaaagagcagaaagtggccgagcgccgcgaa
cgtcgccaactgcgcaagcaggttcgggtcgatgtcgccgccaccgacacccctgccctg
ccggtagacgagcaggcccatgatctggtcgagactgcggccgtggtcggcgagcaagag
gagcagaccgacggtcagcgccgctctcgccgtactccgcgcagtcagcggatcgaaggc
cagcgtcgcaagcgcatcaacgaagatgcccgtggccagcgtgatgatgaacctcaggcc
gaagtgcaactgaccacagccgctcaggcggatgctgctcaggtgaaggtggaagagccc
gccgtgcctgtcatcaccatcccgagcgccgaggccgtcgccgccgcgctgcaagcctct
gccgccctgaccgagcacgtagtcgccgaagccgtggccgaagaggcccatgagcaggct
caagcggctgtggccgaggtcgccgcccctgtggtcgccgaggtggttgaagcccccgtt
gctatcgaggcggccccggtagccatcgaagcagctcctgtcgctgccgagccggtggcc
gaggtggttatcgaggaagctccggtcgtggtcgaggccagcatcgctgaccaggctgtg
gtagaagccgcccccgttgtggtggagccggctcctgccccgcaagccgaggaagtgatt
tctgccgccgagcctgttgcccctgtggttgcacagcccgagcctgtcgtcgccccggcc
accaaaccggttgccaaaggcgctggcgtactggctcgtgcccgcaaggcttctgcgccc
atggcaacgccggcagcagtgcccgccccggccccccgtgagccggttgagcaggccccg
ctggaacgtagcgaagtcgcgagctcaggccgccacggtggcagcactgccgccgtcaat
gtagcaaccagcccggcgggtcgtccctga
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