Aeromonas rivipollensis: C7N77_14390
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Entry
C7N77_14390 CDS
T05453
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
arv
Aeromonas rivipollensis
Brite
KEGG Orthology (KO) [BR:
arv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arv03019
]
C7N77_14390
Enzymes [BR:
arv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C7N77_14390
Messenger RNA biogenesis [BR:
arv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C7N77_14390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
AAA_30
PhoH
ResIII
AAA_23
HA2_N
NACHT
NTPase_1
T2SSE
AAA_11
TsaE
SLFN-g3_helicase
ABC_tran
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AVP94248
LinkDB
All DBs
Position
complement(3104417..3108316)
Genome browser
AA seq
1299 aa
AA seq
DB search
MSLSIEALRRRLSACMNLDARRLSSRLHGVKKLPEGKQTAMLETIAADLAVAESRYQSRL
AGVPRVTYPDNLPVSQKQAEIAKAISEHQVVIIAGETGSGKTTQIPKICLSLGRGVKGYI
GHTQPRRLAARTVAARIAEEMESELGQYVGYKVRFTDQVSEQTHIKLMTDGILLAEIQHD
RMLTQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPQRFSRHFNQAP
IIEVSGRTYPVEVRYRPLASDKSEGLEERDELQGIFDAVEELAREGLGDILIFMNGEREI
RDTADALRKLNLRDTEVLPLYARLSNAEQNKVFQQHAGRRIVLATNVAETSLTVPGIRYV
IDPGTARISRYSWRTKVQRLPIEPVSQASANQRKGRCGRVADGICIRLYSEEDFNGRPAF
TDPEILRTNLASVILQMLALGLGNMEAFPFVEPPESRHIKDGLTLLKELEAVKELPGTRE
QEPKLQLTETGRQLSRIPLDPRLAKMVITAAQTGCLSEVMVITAGLSIQDPRERPMEKKQ
AADEQHRRFEDKDSDFFAFVNLWNYLKEQQDLLGSNPFRRMCQKEFLSYLRVREWQDIHF
QLRQTVKELGFKANHEPADFKTVHCALLTGLLSHIGNKDLEKPEFLGARNGRFHLFPASG
LFKKPPKWVMAAELVETSRLYARINAKIEPEWVEPLAAHLIKLHHSDPHWSKKNGAVMAK
EKVTLYGLTLVVDRTINFSRIDPAQCRELFIRRALVEGDFETRHRFFGENRKLLAEVEAL
EHKSRRRDILVDDEDLFRFYDARLPEEVISARHFDKWWKEAQKQDPELLNFEKEMLMKGD
AAHISDLDYPNFWQQGRLKLKLTYQFEPGEAADGVTLHIPLPLLNQVEVKGFEWLIPGLR
HELLVALIKSMPKPMRKNFVPAPNFADALLATLNPEQGPLLDEMERQLRRMTGVTVPREA
WDWASVPDHLKLTFRVVDDKHKLIAEGKDLEALKESLRGKVQETLSQVADDDIEQSGLTL
WSFGELPQEYSQKRSGFEVKAYPTLVDQKDSVAIQLVESPMAQQQLMWAGQRRLVLLNVP
SPIKYLQEKLPNKAKLGLYFNPFGKVAELIDDCIACGCDKLMEQHGGLAWDEAGFESLKE
FVRAELNDAVVEVAKQVEAVLTLSHEIKKRLKGKMQLDTAFAMSDIQLQLGNLIHKGFVT
ETGWQRLPDLLRYLRAIERRLEKLAIDPNRDRVHMLKVQNVESDYKALLAKIPKSQPIPP
EVANIRWMIEELRVSFFAQQLGTPYPISDKRVQSAIAQC
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
ttgtctctctctatcgaggcgctgcgccgccgtctctctgcctgcatgaatctcgatgcc
cgtcgcctttccagtcgcctgcacggggtcaagaaattgcctgagggcaaacagaccgcc
atgctggagaccatagccgccgatctggcggtggccgaatcgcgctatcaatcccgtctg
gcgggcgtgcccagggtcacctacccggacaacctgccggtcagccagaagcaggcggag
atcgcaaaggcgatcagtgaacaccaggtggtgatcatcgccggcgaaaccggctcgggc
aagaccacccagatccccaagatctgtctctcgctcgggcgcggggtcaagggctatata
ggccacacccagccgcggcgcctcgcggcccgcacggtagcggcccgcattgcggaagag
atggagtcagagctcggccagtacgtgggctacaaggtgcgctttaccgatcaggtgagc
gagcagacccatatcaagctgatgacagacggtatcctgctggcggagatccagcacgac
cgcatgctgacccagtacgacaccatcattatcgatgaggcccacgagcgcagcctcaac
atcgacttcatcttgggctatctcaagcagctgctgccaaggcgcccggatctcaaggtg
atcatcacctcggccaccatagatccccagcgcttctcccgccatttcaaccaggcgccc
atcatagaagtctcaggccgcacctatccggtggaggtgcgctaccgcccccttgccagc
gacaagagcgaggggctggaggagcgcgacgagctgcagggcatcttcgatgcagtcgaa
gagctggcccgagaggggctgggggacatcctcatcttcatgaacggcgagcgggaaatt
cgcgacaccgccgacgccctgcgcaagctcaatctgcgcgataccgaggtgctgccgctc
tacgcccgcctctccaatgccgagcagaacaaggtgttccagcaacatgccggacggcgc
atagtgctcgccaccaacgtggcggaaacctcgctgacggtgccgggtattcgctacgtc
atcgatccgggcaccgcccgcatcagccgttactcctggcgcaccaaggtgcagcgtctg
cccatagagcctgtctcccaggccagtgccaaccagcgtaaaggtcgctgcggccgggtg
gcggacggtatctgtatccgcctctactcggaagaagatttcaatggccgtccggccttt
accgatcccgagatcctgcgcaccaacctggcctccgtcatcttgcagatgctggcgctc
ggccttggcaacatggaggccttccccttcgtcgagccgccagagtcgcgccacatcaag
gatggtttgactctcttgaaagagctggaggcggtcaaagagctgcccggcacccgggag
caggaacccaagttgcagctgaccgaaaccggtcgccagctgtcgcgtattccgctcgat
ccgcggctcgccaagatggtgatcacggcggcgcaaaccggctgtctgagcgaggtgatg
gtgatcaccgccggcctcagcatccaggatccccgcgagcggcccatggagaagaagcag
gccgccgacgagcagcacagacgcttcgaggacaaggattccgatttcttcgccttcgtc
aatctgtggaattacctcaaagagcagcaggatctcctcggcagcaaccccttccgccgc
atgtgccagaaggagtttctctcctacctgcgggtgcgcgagtggcaggacattcacttc
cagctgcgccagacggtgaaagagcttggcttcaaagccaaccatgagccggcggatttc
aagacggtgcactgcgccctgctgaccggcctcttgagccatatcggcaacaaggatctg
gaaaagccggagtttcttggcgcccgcaacggccgcttccacctgttcccggcctcgggc
ttgttcaagaagccgcccaagtgggtgatggccgcagaattggtggagacttcccgcctc
tacgcccgtatcaacgccaagatcgagccggaatgggtagagcccctggcggcgcacctc
atcaagctgcaccacagcgacccccactggtcgaagaaaaacggcgccgtcatggccaag
gagaaggtgaccctctatggtctgaccctggtcgttgatcgcaccatcaacttcagccgc
atcgatccggcccagtgccgcgagctctttatccgccgcgccctggtggagggggatttc
gagacccgccaccgcttctttggcgagaaccgcaagctcttggccgaggtggaagcgctg
gagcataaatcccgtcgtcgcgacatcctggtggatgacgaggatctgttccgcttctac
gatgcccgcctgccggaggaggtgatctccgcccgccacttcgacaagtggtggaaggag
gcgcaaaagcaggatcccgagctgctcaacttcgagaaagagatgctgatgaagggggac
gcggcccacatcagcgatctcgactaccccaacttctggcagcaggggcgcctcaagctc
aagctgacttaccagttcgagccgggggaggccgccgatggcgtcaccctgcatattccg
ttgccgctgctcaaccaggtggaggtgaaggggttcgaatggctgatccccgggctgcgc
catgaactgctggtggccctcatcaagtcgatgcccaagccgatgcgcaagaacttcgtg
ccggccccgaacttcgccgatgcgctgctcgccaccctcaatcccgagcaggggccgctg
ctggacgagatggagcgtcagctgcgccgcatgaccggggtcacagtgccccgtgaagcc
tgggactgggcatcggtgcccgatcacctgaaactcaccttccgggtggtggacgacaag
cacaagctcatcgcggaaggcaaggatctggaggcgctgaaggaatccctgcgcggcaag
gtgcaggagaccctctcccaggtggcggacgacgacatagagcagtcgggcctcaccctg
tggagctttggcgagctgccccaggagtacagccagaagcgcagcggcttcgaggtgaag
gcctatccgaccctggtggatcagaaggactcggtcgccatccagctggtggagagcccg
atggcccagcagcagctgatgtgggcgggccaacgccgactggtgctgctcaacgtgccg
tcccccatcaagtatctgcaggagaagctgccgaacaaggccaagctggggctttacttc
aaccccttcggcaaggtggccgagctgattgacgactgcatcgcctgtggctgtgacaag
ctcatggagcagcacggcggcctggcctgggacgaggccggtttcgagtcgctcaaggag
tttgtccgtgccgagctcaatgacgccgtggtggaggtggccaaacaggtagaagccgtg
ctgaccctctcccatgagatcaagaagcggctcaagggcaagatgcagctcgacaccgcc
tttgccatgtcggacatccagctgcagctgggcaacctcattcacaaggggttcgtgacc
gaaaccggctggcagcggctgcctgacttgctgcgctacctgcgcgccatcgagcggcgc
ctcgagaagctggccatcgatcccaaccgggacagggtccatatgctcaaggtgcagaac
gtggagagcgattacaaggcgctgctcgccaagatccccaaatcccagccgatcccaccc
gaggtggccaatatccgctggatgattgaagagctgcgggtctccttcttcgcccagcag
ctggggacgccgtaccccatctcggataaacgggtgcagagcgccatcgcccagtgctaa
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