Arthrobacter alpinus A3: MB46_02700
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Entry
MB46_02700 CDS
T04228
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
arw
Arthrobacter alpinus A3
Pathway
arw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
arw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MB46_02700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arw03400
]
MB46_02700
Enzymes [BR:
arw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MB46_02700
DNA repair and recombination proteins [BR:
arw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MB46_02700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALV44590
LinkDB
All DBs
Position
631592..635224
Genome browser
AA seq
1210 aa
AA seq
DB search
MSLAGLRTALSADPLFARVRTYAGADPATRSSDIAFSAPAGMRPVLLAEVADGLASLADS
GGVVLAVTATGREAEDTVAALRSYLPEGAVAEFPSWETLPHERLSPRSDTVGRRLSVLRR
LAHPELDAGARLRVIVAPIRAVVQPLVAGLGELVPVRVKAGEEIPFADLIKKLADAAYAR
VDMVTHRGEFAVRGGILDVFSPTDNHPVRIEFFGDEVESLRWFSVADQRTLTSVTGGVVH
PTELYAPPCREILITPTVMGRAAKLKDSMPAAAAMLEKIAGGIAVEGMESLAPALVDGMV
PLTSLLPASSITVVLDPEKVSARAHDLESTNEEFLEAAWSTASDGGSAPLDLTTVSGSGV
DLAAASFRSLSQTRESAQGHGVSWWTMSSLVQDEELDTSSDVLNLAAREPRGYRGDVAEM
MEFIGARVKDQWRVVVATQGPGPAQRLAELFHEANIPASRVESLDAEPQPGIIEVTTADT
GRGFVLDSLKLGLLTEADLLGRASAVSTRDMRKMPSKRLNAVDPLQLQAGDHVVHEQHGV
GKFVELIQRKVAGAGVGGAAGLREYLVLEYAPSKRGAPGDKLFVPTDQLDQVTAYVGGDA
PALSKMGGSDWAATKSKARKAVKEIAGELIRLYSARMASKGHAFGPDTPWQAELEEAFPY
VETPDQLVAINEVKADMEKEVPMDRLISGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTT
LLAQQHFETFNERFSGFPVRVRPLSRFQTTKESKEIVEGVKNGTVDVVIGTHRLLSKDFA
FKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSMTGIRETSTLATP
PEERHPVLTYVGAHSDKQVGAAIRRELMREGQVFYVHNRVKSIDRTAAHIQQLVPDARVA
VAHGQMSESRLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVEQANNYGLSQLHQL
RGRVGRGRERAYAYFLYPADKPLGEVALERLKAVAAHNELGAGMALAMKDLEIRGAGNLL
GGEQSGHIQGVGFDLYIRLVGEAVASFRGDSEERVAEMKIELPVNAHLPHEYVPGERLRL
EAYRKLAAAVTIEEIDEVEAELVDRYGALPPAAINLIAVAHFKVMARTAGLSDVALQGNF
IKFAPADLPESKVMRLNRMYPGSIVKPGLNSILIPKPKTARIGGRDLADAEVLKWAEGVL
EAIFETVPAA
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttgcagggttgcgaaccgcgctctcagccgatccactcttcgcccgcgtccgc
acctacgccggtgccgaccccgccacccggagcagcgacattgcgttcagcgcacccgca
ggcatgcgccccgtactccttgccgaggtggccgacggactcgcgtcacttgccgactcc
ggcggcgtggttcttgccgtcaccgccaccggccgcgaagccgaggacaccgtagccgcg
ctgcgttcctacctccccgagggtgccgtagccgaattcccgagctgggaaacactgccg
cacgaacgcttgtccccgcgatcggacaccgtgggccgccggctctccgtgctgcgccgt
cttgcccatcccgagctcgacgccggagcccgccttcgcgtgatcgtggcacccatccgc
gccgtggttcagccgctcgtggccggcttgggcgagctggtgccggtgagggtaaaagca
ggcgaggagattccgttcgctgacctcatcaagaaactggccgacgccgcctatgcccgc
gttgacatggtgacccaccgtggcgagttcgccgtgcgcggcggcatccttgacgtcttc
tcgcccacggataaccaccctgtccgcattgagttttttggcgacgaggtggagtcgctg
cgctggttcagcgtggccgatcagcggacgctgacctctgtcaccgggggtgttgtacac
cccaccgagctctatgcaccgccttgccgggaaatcctcatcacccccaccgtgatgggc
cgtgccgccaagctcaaggacagcatgcccgccgccgcggccatgctggaaaagattgcc
ggcggcattgccgtggaaggcatggagtcattggctccggccttggtggacggcatggtg
ccgctgacctccctgctgcccgccagctccatcaccgtggtcctcgatcccgaaaaggtc
agtgccagggcgcacgatcttgaatccaccaacgaggaattcctagaggccgcctggtcc
accgcgtccgacggcggcagcgcgcctttggacttgaccaccgtttcgggcagcggcgtt
gacctcgccgccgccagcttccggtccctgtcacaaactcgcgaatccgcacagggccac
ggcgtgagctggtggaccatgagttccctggtccaagacgaggaactggacacctccagc
gacgtgctgaacctggccgcccgcgaaccccgtggctaccgcggtgacgtggcagaaatg
atggagttcattggcgcccgggtcaaggaccagtggcgcgttgtagttgccactcagggc
cccggcccggcccagcgccttgccgagctattccacgaagccaacatcccggcgtcgcgc
gttgaatcgctggatgcagaaccccagccgggcatcatcgaggtcaccacggccgacacc
ggacgcggctttgtcctggactccctcaagctggggctgctgaccgaggcggacctcctg
gggcgggcctccgccgtctcaacccgcgacatgcgcaagatgccctccaagcggctcaac
gccgtcgaccctctccagctgcaggccggcgatcacgtggtccacgagcagcacggtgtg
ggcaagttcgtggaactgatccagcgaaaggttgccggggccggcgtgggcggggctgcg
ggtctgcgcgaatacctggtgctcgagtacgcgccgtccaagcgcggcgcacccggtgac
aagctcttcgttcccacggaccagctggatcaggtcacggcctatgtgggcggtgacgcg
ccggccctgtccaagatgggcggctccgactgggccgccaccaagtccaaggcccgcaag
gccgtcaaggagatcgccggcgagctgatccggctctactctgcccgcatggcctccaag
gggcacgcctttgggcctgatacgccctggcaggccgagctggaggaggcgttcccatat
gttgagacgcctgaccagctggtggccatcaacgaggtcaaggccgacatggagaaggaa
gtccctatggaccggctcatctccggcgacgtgggctacggcaagaccgaaattgctgtg
cgtgcagcgttcaaggctgtgcaggacggcaagcaggtagccgtcttggtgcccaccacg
ctcttggcacaacagcactttgagaccttcaacgagcgtttttccggcttccccgtgcgc
gtccggccgctgtcccgcttccaaacgaccaaggaatccaaggagatcgttgagggtgtg
aaaaacggaaccgtggacgtggtcattggcacacaccgccttttgtccaaggactttgcg
ttcaaggatctgggcctggtgattgttgatgaggagcagcgttttggtgttgagcacaag
gaagcgctgaagaagatgcgcaccaacgtggatgtgttggccatgagcgccactcccatc
cctcgcaccttggagatgtcgatgaccggcatccgcgaaacctccacgttggcaacccct
cccgaggagcgtcaccccgtgctgacctacgtcggtgcgcacagtgacaagcaggtgggt
gccgccatccgccgcgagctgatgcgtgaaggccaggtgttttatgtgcacaaccgggtt
aaatcaatcgatcgcacagcggcccacatccagcagctagtcccggacgcccgcgtggcc
gtggcacatggtcagatgtctgagtcccggctggaacaaatcattgttgacttctgggag
aagcgctttgacgtgctggtgtgcacaaccatcattgaaaccggcctggacatctccaac
gccaatacgctgatcgtggagcaggccaacaactacgggttgtcccagctgcaccagctg
cgtggccgtgtgggccgaggccgcgaacgggcctatgcctacttcttgtacccggcggac
aagccgttgggtgaggttgccctggaacgcctcaaggcagtagctgcgcacaatgagctg
ggtgccggtatggcgctggccatgaaggaccttgaaatccgtggtgcgggaaacctgctg
ggcggggaacagtccgggcacatccagggtgtgggcttcgacctgtacatccgcctggtg
ggcgaggccgtggcttcgttcaggggtgacagtgaagagcgcgttgcggaaatgaagatc
gagttgcccgtcaatgcgcatctgccgcacgagtacgtgccgggggagcggctgcggttg
gaggcataccgcaagctggctgcagcggtgaccattgaagaaattgatgaagtcgaggcc
gaattggtggatcgctacggtgcattgccgccggccgcgatcaacctcatcgcagtggcg
cacttcaaggtcatggcgcgtaccgccgggctgtcagacgtggcgctgcagggcaacttc
atcaagtttgccccggccgatctgccggagtccaaggtcatgcgcctgaaccgcatgtac
cccgggtcaatagtgaagcccggactgaactcgatcctgatccccaagcccaagacggcc
cggatcggtggccgcgatctggcagacgcagaggtgctcaaatgggcagaaggcgttctc
gaggcgatctttgagacggtgccggcggcgtag
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