Arthrobacter sp. ZXY-2: ARZXY2_656
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Entry
ARZXY2_656 CDS
T05201
Symbol
deaD
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
arx
Arthrobacter sp. ZXY-2
Pathway
arx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ARZXY2_656 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arx03019
]
ARZXY2_656 (deaD)
03009 Ribosome biogenesis [BR:
arx03009
]
ARZXY2_656 (deaD)
Enzymes [BR:
arx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ARZXY2_656 (deaD)
Messenger RNA biogenesis [BR:
arx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ARZXY2_656 (deaD)
Ribosome biogenesis [BR:
arx03009
]
Prokaryotic type
rRNA helicases
ARZXY2_656 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AOY70221
LinkDB
All DBs
Position
691542..693626
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AA seq
694 aa
AA seq
DB search
MPDTLNENLDAATESAEAAVTTADAAETAETQPAAVETPASAPAAESAPAAEDEEEGVRF
TDLGLDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRL
AELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHMDDFTVLPVYGGSAYGPQLAGL
RRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQETPETRQ
VALFSATMPGQIRRMSKQYLNNPAEISVKSKTSTGSNIRQRYLQVMGPHKLDAMTRILEV
EEFDGVIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALREGRIDILVAT
DVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRAIEK
ATRQPVEQMHLPTAETVNSLRLGKFAERITETLESEDVSLFRDLIASYEEEHKVPAAEIA
AALAVMAQGGQPLLVKDLPAAPEFQKRERSKDGFNSRGPSRTLTEGNATYRIAVGRRQRV
MPGSIVGAIANEGGISSSQIGGIDIRSDHSLVELPADLSPEQLRALSRTRIGGELIHLEL
DTGRKPNRDGDRGGRGGNFKGNGGFKKEFRRHDGERSSADRGGRSYSERTSGSYGDRDRG
QSGGSRFGGHGDGARKPRGGGEGGHRDFNRKGKW
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgccagacactctcaacgagaacctcgacgccgccactgaatctgccgaagcagcagtg
accaccgctgacgctgccgaaaccgccgaaacgcagccggccgccgtcgagacccccgct
tccgctcccgccgcagagtccgctcccgcagcagaagacgaggaagagggcgttcgtttc
accgacctcggccttgacggtcgcgtgctcgcagcccttcaggacgtcggctacgagaag
ccgtcgccgatccaggctgccaccattccgctgctgctcgaaggccgcgacgtcgtcgga
ctggcccagaccggtaccggcaagactgcagcattcgctgttcccgccctatcccgcctg
gctgagctgcacgacctcaacggcccctcacgcaagacccaggccctggtcctggccccg
acgcgtgaactcgccctccaggttgctgaagccttcacctcctacgccaagcacatggac
gacttcaccgtgctgcccgtctacggtggttcggcctacggtccccagctcgcaggtctt
cgccgcggcgcccaggttgttgtgggcacgccgggccgcgtgatcgaccacatctccaag
ggttccctggacctttccgaacttcagtacctggtgctggatgaagccgacgagatgctg
cgcatgggctttgccgatgacgtggagcagatcttccaggagaccccggaaacccgccag
gtggccctgttctccgcgaccatgcccggccagatccgacgcatgtccaagcagtacctg
aacaacccggcggaaatctcggtcaagtccaagacctccacgggttccaacatccgccag
cgctacctgcaggtcatgggcccgcacaagctggacgcgatgacccgcatcctcgaggtt
gaagagttcgacggcgttatcgccttcgtgcggaccaagatggctaccgaggacctcgcc
gacaaactgaaggcccgcggtttccaggccgccgccatcaacggcgacattccccagcag
cagcgtgaacgtaccgttgacgccctgcgtgagggccgcatcgacatcctggtggctacc
gacgtcgccgcccgtggcctcgatgtggagcgcatcagccacgtggtgaactacgacatc
ccgcacgacaccgagtcctacgtccaccgcatcggccgtaccggtcgcgcaggacgcagc
ggtgacgccatcctcttcatgacgccgcgcgagaagtacctgctgcgtgccatcgagaag
gcgacccgccagcctgtcgagcagatgcacctgcccacggccgagacggtcaactcgctg
cgcctgggcaagttcgcagagcgcatcacggagaccctcgagtccgaggacgtctcgctg
ttccgcgacctgattgcctcctacgaagaagagcacaaggtcccggccgcagagatcgct
gcagcgctggcagtcatggcacagggcggccagccgctcctggtcaaggaccttcccgct
gctcccgaattccagaagcgcgagcgttccaaggacggcttcaactcccgcggcccgtcc
cgcaccctcaccgagggtaacgcgacctaccggatcgcggttggacgccgtcagcgcgtg
atgcccggttccatcgtgggcgccattgccaacgagggcggtatctcgtcctcgcagatc
ggtggcatcgacatccgctctgaccactccctggttgaactgcctgcagacctcagcccg
gagcagctgcgcgccctgtcccgcacccgcatcggcggcgaactgatccacctcgagctg
gacacgggacgtaagccgaaccgtgacggagaccgtggtggccgtggcggcaacttcaag
ggcaacggcggcttcaagaaggagttccgccggcacgacggcgagcgttcctccgctgac
cgcggcggacgctcctacagcgagcgtacgtccggtagctacggtgaccgtgaccgcggc
cagtccggcggctcccgtttcggcggccatggtgacggcgcccgcaagccccgcggcggc
ggcgaaggcggccaccgcgatttcaaccgcaagggcaagtggtaa
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