Arthrobacter sp. YC-RL1: ATC04_05615
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Entry
ATC04_05615 CDS
T04187
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ary
Arthrobacter sp. YC-RL1
Pathway
ary03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ary00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATC04_05615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ary03019
]
ATC04_05615
03009 Ribosome biogenesis [BR:
ary03009
]
ATC04_05615
Enzymes [BR:
ary01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATC04_05615
Messenger RNA biogenesis [BR:
ary03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATC04_05615
Ribosome biogenesis [BR:
ary03009
]
Prokaryotic type
rRNA helicases
ATC04_05615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
UvrA_inter
Cas3-like_C_2
adh_short
Motif
Other DBs
NCBI-ProteinID:
ALQ30086
UniProt:
A0A9X0FGL1
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All DBs
Position
1211591..1213480
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AA seq
629 aa
AA seq
DB search
MPVNTADTQTTEEPTVTFSELGLDARVLAALADLGYEKPSPIQAATIPLLLDGRDVVGLA
QTGTGKTAAFALPALSRMAELADLNGPATTPQILVLAPTRELALQVAEAFTSYAKYLPDF
TVLPVYGGSPYGPQLAGLRRGAQVVVGTPGRVIDHINKGSLDLSNLQYMVLDEADEMLRM
GFAEEVDKILEATPEEKQVALFSATMPRTIRRIASEYLRNPQEVAVKSKQTTGANITQRY
LQVMGAHKLDAMTRILESEEFDGVIAFVRTKMATEDLADKLKARGFTAAAINGDIPQQQR
ERTVENLRSGKIDILVATDVAARGLDVERISHVVNFDIPHDTESYVHRIGRTGRAGRKGD
AILFMTPREKYLLRAIEKATRQSVTQMQLPSLDSVNNRRIQKFTDRIDATITGQDLGTFR
EIVEQFAAQHEDLDHLEIAAALALMAQGGRPLLMTEPVMPPSKKARLERDRADRGDRGER
GPRRGKTAAEGNAMYRLAVGRRNRVQPGSIVGALANEGGFNSSEIGGIEIRSDHTLVELP
AELSKDQWRALSNTRIGGEPINLELDSGRKPRRDDESDRGGYRGGRGGSFNDRKRAGGFR
GDDRRGGGDKRFGGRGKDRFSDSARRRDY
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtaaacactgccgacacccagaccaccgaggaaccaacggttaccttcagcgaa
cttggtcttgatgcccgcgtgcttgctgcactggccgacctgggctacgaaaagccgtcg
ccgatccaggccgccaccattccgctgctgctcgacggccgcgacgttgtcggtctggcc
cagaccggtaccggcaagactgccgctttcgcattgcctgcgctctcccgcatggcagag
ctggccgacctgaacggtccggccaccaccccgcagatcctggttctggcaccgacccgc
gagctcgcgctgcaggttgccgaggctttcacctcctacgccaagtaccttcctgacttc
accgtgctgcctgtctacggcggctcgccatacggcccgcagctggccggcctgcgccgc
ggcgcacaggttgtcgtcggcaccccgggtcgcgtgatcgaccacatcaacaagggttcc
cttgacctgtccaacctgcagtacatggtgctggacgaggccgacgaaatgttgcgcatg
ggcttcgccgaagaggtcgacaagatcctggaagccaccccggaagagaagcaggttgcc
ctgttctcggccaccatgccacgcaccatccgccgcattgcttcagagtacctgcgcaac
ccgcaggaagtcgccgtcaagtccaagcagaccaccggcgccaacatcacccagcgttac
ctgcaggtcatgggcgcccacaagctggacgccatgacccgcatcctcgagtccgaggaa
ttcgacggcgtcatcgccttcgtgcgcaccaagatggccaccgaggacctcgccgacaag
ctgaaggcccgcggcttcaccgctgcagccatcaacggcgacatcccgcagcagcagcgc
gagcgcacggtcgagaacctgcgttcgggcaagatcgacatcctggtcgccaccgacgtt
gccgcccgcggcctggacgtcgagcgcatctcgcacgtcgtgaacttcgatatcccgcac
gacaccgagtcctacgtgcaccgcatcggccgtaccggccgcgcaggccgcaagggcgac
gcgatcctcttcatgaccccgcgtgagaagtacctgctgcgcgccatcgagaaggctacc
cgccagtcggtgacccagatgcagctgccttccctggattcggtgaacaaccgccgcatc
cagaagttcaccgaccgcattgatgcaaccatcaccggccaggacctgggcaccttccgc
gaaatcgtggagcagttcgccgcccagcacgaggacctggaccaccttgaaatcgctgcg
gccctggccctcatggcccagggcggccgcccgctgctgatgaccgagccggtcatgcca
ccatccaagaaggcccgcctggagcgcgaccgcgcagaccgtggcgatcgcggagagcgc
ggcccacgccgtggcaagacggccgccgagggcaacgccatgtaccgtctggcagttggc
cgccgcaaccgcgtgcagccgggttccattgttggcgcactggccaacgagggcggcttc
aactcctcggaaatcggcggcatcgagatccgttcggaccacaccttggtcgagctgcca
gccgagctgagcaaggaccagtggcgtgcactgtccaacacccgcatcggcggcgagccg
atcaacctggagctggactccggccgcaagccgcgccgcgatgacgaatcggatcgcggc
ggttaccgcggcggacgtggcggcagcttcaacgaccgcaagcgcgcgggcggcttccgc
ggcgatgaccgccgtggcggcggcgacaagcgcttcggcggacgaggcaaggatcgcttc
agcgattcggctcgtcgccgcgactactaa
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