Arthrobacter sp. YC-RL1: ATC04_06995
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Entry
ATC04_06995 CDS
T04187
Name
(GenBank) DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ary
Arthrobacter sp. YC-RL1
Pathway
ary03420
Nucleotide excision repair
ary03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ary00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ATC04_06995
03430 Mismatch repair
ATC04_06995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ary03400
]
ATC04_06995
Enzymes [BR:
ary01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATC04_06995
DNA repair and recombination proteins [BR:
ary03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ATC04_06995
MMR (mismatch excision repair)
Other MMR factors
ATC04_06995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
PhoH
Motif
Other DBs
NCBI-ProteinID:
ALQ30333
UniProt:
A0A9X0FG78
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All DBs
Position
1482692..1486036
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AA seq
1114 aa
AA seq
DB search
MSMIKYTPQELSEALGEKFPPTKQQAQIISAPLEPMLVIAGAGSGKTKTMADKVVWLVAN
QLVRPEEILGVTFTRKAAGELSVRIRAKIAQLVATGLLSEETTRDFLDPAVSTYHSYANT
LVQDHGLRLGLEEDTVLLGAAQSWQLAHTVLESYTGDYRHLNSATSTLIDAIVSFSSEAA
EHLLTAPEAHGWIDDLVARLRTLPMDPEKNKAPTQAALKLIDKLASRATIAQLAEDYAAQ
KKKLGVMDYGDLVAHAATIAQQVPAAALAERTTHKVVLLDEFQDTSHAQMVLFSELYGQG
HPVTAVGDPNQSIYGFRGASAGQLFRFPEKFPIHRPNGRELAHVNHLTIAWRNTVNVLEA
ANAITGGGAQQSTGPVAVKPLEPSAFALPGRVVLNRCATVRQEAEAIADLIQGEGFVAAD
GTVLTSAVLSRNRGQLASMAEVLDERGIAYQFVGLSGLLSTPELTDLVACLHVLVDPLRS
DKLMRLLAGARWRLGPADLTAFADWSRQLERRRARGLNPQEIQNETGTESEPALEAVRAE
LNDGASLVEALDYLPPEHWTSGDGRQLSAEGRARLVRLREELAGLRLLANDDLDTLIREV
ERSMNLDIEVAARPWVDRDKSRANLDAFADVVREYCRNAPRVELAGFLMWLEQAAEKEKG
LPLPGEDADPKAVQLLTVHASKGLEWDTVAVMSMNDGVFPGSKSDRWTSGDKAVPWPLRG
DARDLPQWDTDQSSLKELLEAESMFTSDVEDHHIAEERRLAYVAVTRAKTLLICSSSIWT
NSRTKPTDPSLFFSALMPLAEGEHPRAEIGVWVKDEDAPEQNPSRMTPLEADWPYDPLAG
PEIRGGVAKSPHPYSRREVLQELADDVLSPGTGREISTDVGRAWAEEARRLLAQREFLAN
RERGIEAPEHVRASLFVELAEDPVEVLENLRRPVPRRPGLAARRGTAFHAWIEEYYEKTS
MLDLGDIMEPADSYLDDALDLASMKEAFLASEWAQLQPAYVEVPLETRVGPVAVRGRIDA
VFRLEDGTWLMLDWKTGRVPSGKDLKSKLVQLAVYRLGWSRLHGIPLDQIKAAFYYVAAG
VTIHAEHLSGEQELEEMITTAFEQLEEGEPAGTP
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgatcaagtacaccccgcaggagctctccgaggcgctgggggagaagttcccg
cccaccaagcagcaggcgcagatcatcagcgccccgctggagcccatgctggttatcgcc
ggcgccggatccggcaagaccaagaccatggctgacaaggtggtctggctggtcgccaac
cagctggtgcgcccggaggaaatcctcggagtgaccttcacccgcaaggccgccggcgag
ctgtcggtgcgcatccgcgcaaagatcgcccagctggtggccaccggactgctcagcgag
gaaaccacccgggacttcctggaccccgcggtatccacctaccactcctacgccaacacc
ctggtccaggaccacgggctgcgcctcggactggaggaggacaccgtgctgctgggcgcc
gcgcagtcctggcagctggcccacacggtgcttgaaagctatacgggggactaccgccac
ctgaacagcgccaccagcacgctgatcgacgccatcgtgtccttcagctccgaagcggcc
gagcacctgctcaccgcgcccgaggcgcacggctggatcgacgacctggtggcccggctg
cgcaccttgccgatggacccggagaagaacaaggcgcccacgcaggccgccctcaagctc
atcgacaagctggcctcccgcgccaccatcgcgcagctggccgaggactacgcggcgcag
aagaagaagctcggcgtcatggactacggcgacctggtcgcccacgcagcgaccatcgcc
cagcaggttcccgccgcggcgctcgccgaacgcacgacgcacaaggtggtgctgctggac
gagttccaggacacctcgcacgcccaaatggtgctgttctccgaactctacggccagggc
cacccggtgaccgcggtgggcgaccccaaccagtcgatctacggcttccgcggagccagc
gccgggcagctgttccgcttcccggagaagttcccgatccaccgtcccaacggccgcgaa
ctggcccacgtcaaccacctgaccatcgcctggcgcaacaccgtcaacgtgctggaggcc
gccaacgccatcaccggcggcggggcgcagcagtccaccgggccggtggcagtgaagccg
ctggagccctcggccttcgcgctgcccgggcgggtggtgctcaaccgctgcgccaccgtg
cgccaggaagccgaagccattgccgacctgatccagggcgaaggcttcgtcgccgccgat
ggcaccgtgctcaccagcgccgtgctttcgcgcaaccgcgggcagctcgcctccatggcc
gaggtgctcgacgagcgcggcatcgcctaccagttcgtgggcctttccgggctgctcagc
accccggaactgaccgatttggtcgcttgcctgcacgtgctggtggatccgctgcgctcg
gacaagctcatgcggctgctggccggcgcgcgctggcggctgggccccgcggacctgact
gccttcgcggactggtcccggcagcttgaacgccgccgggcacgcggactgaacccgcag
gagatccagaacgagacggggacggaatccgagcctgcgctggaagccgtccgcgcggag
ctgaacgacggcgccagcctggtggaagccctggactacctgccgccggagcactggacc
agcggcgacggacgccagctcagcgccgagggccgggcccggctggtccggctgcgcgag
gagctggccgggctgcggctgctggccaacgacgacctggacacgctgatccgcgaggtc
gaacgatccatgaacctggacatcgaggtcgccgcccgtccgtgggtcgaccgcgacaag
tcccgggcgaacctcgatgccttcgctgacgtggtccgcgaatactgccgcaacgccccg
cgagtggaactggccggattcctgatgtggctggaacaggcagccgaaaaggaaaagggc
ctgccgctgccgggcgaggacgcagacccgaaggcggtgcagctgctcaccgtgcatgcc
tccaagggccttgaatgggacaccgtggcggtcatgtcgatgaacgacggggtgttcccg
ggatcgaagtcagaccgctggaccagcggcgacaaggcggtcccgtggccgctgcgcggc
gatgccagggatctgccgcaatgggacaccgaccagtcctcgctcaaggagctgctcgaa
gccgaatccatgttcacctccgatgtggaagaccaccacatcgccgaggaacggcgcttg
gcctacgtggcggtgacccgcgccaagaccctgctgatctgcagcagcagcatctggacc
aacagccggaccaagccgaccgacccatcgttgttcttcagcgcgctgatgccgctggcc
gagggggagcacccgcgggctgagatcggcgtgtgggtgaaggacgaggatgcgccggag
caaaaccccagccgcatgacgccgctggaggccgattggccctatgacccgctggccggg
cccgagatccgcggcggcgtggccaagagcccgcacccgtattcgcggcgtgaggtgctc
caggaacttgcagatgacgtcctgtcgccgggcaccggccgcgagatcagcaccgacgtg
ggtcgagcctgggccgaggaagcgcggcgccttctcgcccagcgtgaattcctggccaac
cgggaacgcggcatcgaagcgccggaacacgtgcgcgcctcgctcttcgtcgaactggcc
gaagaccccgtcgaggtgctggagaacctgcgccggccggtgcctcgccgcccgggcctg
gcggcccgccgcggcaccgcgttccatgcctggatcgaggagtactacgagaagacctcg
atgctggacttgggcgacatcatggagccggccgacagctatctggacgacgcgctggac
ttggcatccatgaaggaggccttcctcgccagcgaatgggcgcagcttcagcctgcctat
gtggaggtgccgctggaaacgcgcgtgggcccggtggcagtgcgcggccgaatcgacgcg
gtgttccgcctggaggacggaacctggctgatgctcgactggaagaccggacgggtgccc
tcgggcaaggacttgaagagcaagctggtccagctggccgtttaccggctgggctggtcc
aggctccacggcattccgctggaccagatcaaggccgcgttctactatgttgccgcgggc
gtgacgatccatgcggagcacctgtccggcgaacaggagctcgaggaaatgatcaccact
gcgttcgagcagctggaagaaggggagccggccggcaccccgtaa
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