Arthrobacter sp. YC-RL1: ATC04_11840
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Entry
ATC04_11840 CDS
T04187
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ary
Arthrobacter sp. YC-RL1
Pathway
ary03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ary00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATC04_11840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ary03021
]
ATC04_11840
03019 Messenger RNA biogenesis [BR:
ary03019
]
ATC04_11840
Transcription machinery [BR:
ary03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ATC04_11840
Messenger RNA biogenesis [BR:
ary03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ATC04_11840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
NACHT
DUF7440
Motif
Other DBs
NCBI-ProteinID:
ALQ31181
LinkDB
All DBs
Position
complement(2555083..2557281)
Genome browser
AA seq
732 aa
AA seq
DB search
MTETTSLNEGVDTKTSETKSSGLASLKMTQLQQLASQLGITGGSRMRKADLVAAISSHQR
GGSIAAKDAEAAKAAEPKADAAQAPAAKEAPAKTTRTRRAPKAAAEAPKADAAPAQEAAE
APQAAEPKAEKPARARRTSRRVTDSGKITAKDDAAKAATTEAPAQAEAAVDAPAEEAAAP
AKERAPRQRRNTRAAKAEQASEAPAQDADAPAAEAKTAPAEADAAENAEAEKSGEQREER
RERGNRRERGNRRERNNDRNDRGNDRNDRGGDRNESSEQDASEQSEERRDRNQERNERNE
RNANRRERNNDRSERGNRRDRNDRNDRNQDRNDRNNRNRRGRREDDEPQLSEDDVLLPIA
GILDVLENYAFVRTAGYLPGPNDVYVTLGQVKKYNLRKGDAIVGAIRAPREGETPNPRQK
FNALVQLTSVNGKKPEDNRERVEFNKLVPLYPTERLRLETDPKLVGPRVIDLVAPIGKGQ
RGLIVSPPKAGKTLILQSIANAITTNNPEVHLMMVLVDERPEEVTDMQRTVKGEVIASTF
DRPADDHTTVAELAIERAKRLVEMGMDVVVLLDSMTRLGRAYNLAAPASGRILSGGVDSA
ALYPPKRFFGAARNIENGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRLSRQLAEK
RIFPAVDVNASSTRREEQLMSAEEVRIMWRLRRMLSGIDPQQALEVLTGKIRETQSNAEF
LMLVNKTTPDKH
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaaaccacgagcctcaacgaaggcgtggacaccaagacttccgagaccaagagc
tccggcctggcctccttgaagatgacccagctgcagcagctggcgtcgcagctcggcatc
accggcggatcgcgcatgcgcaaggccgacctggtcgccgccatcagctcccaccagcgc
ggcggctcgatcgccgccaaggacgcggaagctgccaaggccgccgagccgaaggccgac
gcagcccaggcgccagccgccaaggaagcgccggccaagaccacccgtacccgtcgcgca
ccgaaggccgctgcagaggccccgaaggccgacgcagcccccgcccaggaagcagctgag
gccccgcaggccgccgagccgaaggctgaaaagccggcccgcgcccgccgcacctcgcgc
cgcgtgaccgactccggcaagatcaccgccaaggacgacgccgccaaggcagcgaccacc
gaggcaccggcccaggccgaagccgcagtggacgcgccggccgaggaagccgccgcaccg
gccaaggaacgcgcaccgcgccagcgccgcaacacccgcgccgctaaggcagagcaggca
tccgaggctccggcacaggatgccgacgccccggccgccgaggccaagaccgctccggcc
gaagccgatgccgcggagaacgccgaggcggagaagtccggcgagcagcgcgaagagcgc
cgcgagcgcggcaaccgccgtgagcgtggcaaccgccgtgagcgcaacaacgaccgcaac
gaccgtggcaacgaccgaaatgaccgcggcggcgaccgcaacgagtcttccgagcaggac
gcgtccgagcagtcggaggagcgccgcgatcgcaaccaggagcgcaacgagcgcaatgag
cgcaacgccaaccgccgtgagcgcaacaacgaccgcagcgagcgcggcaaccgccgcgat
cgcaacgatcgcaatgaccgcaaccaggatcgcaacgaccggaacaaccgcaaccgccgc
ggccgccgcgaggacgacgagccgcagctgagcgaggacgacgtgctgctgccgatcgcc
ggcatcctggacgtgctggagaactacgcattcgtccgcaccgccggctacctgcccggc
ccgaacgacgtctacgtcaccctgggccaggtcaagaagtacaacctgcgcaagggcgac
gccatcgtcggcgccattcgcgcaccgcgcgagggcgagaccccgaacccgcgccagaag
ttcaacgccctggtgcagctgacttcggtgaacggcaagaagccggaggacaaccgcgag
cgcgtcgaattcaacaagctggtgccgctgtacccgaccgagcgcctgcgcctggagacc
gatccgaagctggtcggcccgcgcgtcatcgacctggtcgcaccgatcggcaagggccag
cgcggcctgatcgtctcgcctccgaaggccggcaagaccctgatcctgcagtccatcgcg
aacgcgatcaccaccaacaacccagaggtgcacctgatgatggtgctggtggacgagcgt
cccgaagaagtcaccgacatgcagcgcaccgtcaagggcgaggtcatcgcctcgaccttc
gaccgcccggccgacgaccacaccaccgtggccgagctggccatcgagcgcgccaagcgc
ctggtggaaatgggcatggacgtcgtcgtgctgcttgactcgatgacccgcctgggccgc
gcctacaacctggccgccccggcttcgggccgcatcctgtccggcggcgtggactccgcg
gcgctgtacccgcccaagcgcttcttcggcgccgcccgcaacatcgagaacggcggctcg
ctgaccatcctggccaccgccctggtggagaccggatccaagatggacgaggtcatcttc
gaggagttcaagggcaccggcaacatggagctgcgcctgtcgcgccagctggccgagaag
cgcatcttcccggcggtcgacgtcaacgcgtcctccacccgccgcgaagagcagctgatg
agcgccgaagaggtgcgcatcatgtggcgcctgcgccgcatgctctcgggcatcgatccg
cagcaggcgctggaggttctcaccggcaagatccgcgagacccagtccaacgcagaattc
ctgatgctggtgaacaagaccacaccggacaagcactag
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