Arthrobacter sp. YC-RL1: ATC04_12730
Help
Entry
ATC04_12730 CDS
T04187
Name
(GenBank) ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ary
Arthrobacter sp. YC-RL1
Pathway
ary03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ary00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATC04_12730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ary03019
]
ATC04_12730
Messenger RNA biogenesis [BR:
ary03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ATC04_12730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ALQ31335
LinkDB
All DBs
Position
complement(2743759..2745465)
Genome browser
AA seq
568 aa
AA seq
DB search
MTESSVGKADSARMQTPAKVKKGTMRIVPLGGLGEVGRNMTVFELDGKLLIVDCGVLFPE
EHQPGVDLILPDFSYIKDRLDDVVGLVLTHGHEDHIGAVPYLLRLREDIPLYGSKLTLAF
VEAKLAEHRIKANSNIVVEGEIAQVGNFECEFVAVNHSIPDALAVFLRTEAGTVLHTGDF
KMDQLPLDGRITDLRHFARLGEEGVDLFLPDSTNAEVPGFTVAEREIGPVLEAKFARARR
RIIVASFSSHVHRVQQVLDAAAMHGRKVAFIGRSMVRNMGIAERLGYLDIPPGVLVDLKQ
IDQLPDHKVVLMSTGSQGEPMAALSRMANGEHKVQINPGDTVILASSLIPGNENSVFRVI
NGLMRLGAEVIHKGMAKVHVSGHASAGELLYCYNILRPKNVLPVHGETRHLIANGRLAAQ
SGVPEENVLLAEDGSVIDLKDGVAKLVGQVECGYVYVDGSKVGTITDDDLKDRVTLGEEG
FISVITVINRQNGTIISGPDIHARGVAEEDSVFNEIKPKIAAAIVEAVANNPNHTTHQLQ
QITRRVIGSWVSRKLRRRPMIVPVVLEA
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgactgagagttcagtaggaaaggccgattctgcgcgcatgcagaccccggccaaggtg
aagaaggggaccatgcgcatcgtccccctcggaggcttgggcgaagtcggccgaaacatg
acagtgttcgagctcgacggcaagctgttgatcgtggactgcggcgtgctcttccccgag
gagcaccagcctggcgtggatctgatcctgccggacttctcatacatcaaggaccgcctg
gacgacgtggtgggcctcgtgctcacccacggccatgaggaccacatcggtgcggtgccg
tacctgctgcgccttcgcgaagacatcccgctgtacgggtccaagctgaccctggccttc
gtcgaagccaagctggccgagcaccgcatcaaggccaacagcaacatcgtggtggagggc
gagatcgcccaggtcggcaacttcgaatgcgaattcgtcgcggtcaaccactccatcccg
gacgccctggcggtcttcctgcgcaccgaggccggcaccgtgctgcacaccggcgacttc
aagatggatcagctgccgctggacggccgcatcaccgatctgcgccacttcgcccgcctc
ggggaggaaggcgtggacctgttcctgccggactccaccaacgcggaggtgccgggcttc
accgtcgccgaacgcgaaatcggcccggtgctcgaagccaagttcgcccgcgcccgccgc
cgcatcattgtcgcttccttctcctcgcacgtgcaccgcgtgcagcaggtgctggacgcc
gcggccatgcacggacgcaaggtggccttcatcggccgctcgatggtgcgcaacatgggc
atcgccgaacgcctgggctacctggacatcccgccgggcgtactggtcgacctgaagcag
atcgaccagctgccggaccacaaggtcgtgctgatgtccaccggctcgcagggtgagccg
atggccgcgctctcgcgcatggccaacggcgagcacaaggtgcagatcaacccgggcgac
accgtgatcctggcttccagcttgatcccgggcaacgagaactcggtcttccgcgtgatc
aacggcctgatgcgcttgggcgccgaggtcatccacaagggcatggccaaggtccacgtc
tccgggcacgcctcggccggcgagctgctgtactgctacaacatcctgcgcccgaagaac
gtgctgccggtgcacggcgaaacccgccacctgatcgccaacggccgcctggccgcgcag
tcgggtgtgccggaggagaacgtgctgctggccgaggacggctcggtcatcgacctcaag
gacggcgtggccaagctcgtcggccaggtcgaatgcggatacgtctacgttgacggctcc
aaggtcggcaccatcaccgacgacgacctgaaggaccgcgtcaccctgggcgaggagggc
ttcatctcggtcatcaccgtgatcaaccgccagaacggcaccatcatctccggcccggac
atccacgcccgcggcgtggccgaagaggactcggtcttcaacgagatcaagccgaagatc
gccgctgcgatcgtggaggcggttgcgaacaacccgaaccacaccacgcaccagctgcag
cagatcacgcgccgcgtgatcggctcgtgggtttcgcgcaagctgcgccgccgcccgatg
atcgtacctgtggtgctcgaagcctag
DBGET
integrated database retrieval system