Arthrobacter sp. YC-RL1: ATC04_15725
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Entry
ATC04_15725 CDS
T04187
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ary
Arthrobacter sp. YC-RL1
Pathway
ary03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ary00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATC04_15725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ary03019
]
ATC04_15725
03400 DNA repair and recombination proteins [BR:
ary03400
]
ATC04_15725
Enzymes [BR:
ary01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATC04_15725
Messenger RNA biogenesis [BR:
ary03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATC04_15725
DNA repair and recombination proteins [BR:
ary03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ATC04_15725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HTH_IclR
HEM4
PhyR_sigma-like
MRFAP1
Motif
Other DBs
NCBI-ProteinID:
ALQ31847
UniProt:
A0A9X0FJF2
LinkDB
All DBs
Position
complement(3420684..3422804)
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AA seq
706 aa
AA seq
DB search
MDASLHSDLLSSATAKLRALVRNPDAQFHDGQFEAISALVAQRRRALVVQRTGWGKSAVY
FIASLLLREQGFGPTLIVSPLLALMRDQVAAAERAGVRAAAINSANVLEWREILEKLQRD
EIDVLLVSPERLNNPSFREQQLPMLLDRLGLLVIDEAHCISDWGHDFRPDYRRIRDLINK
LPAGLPVLATTATANSRVVEDVAEQLAGGAGEVFTLRGTLARDSLRLGVLRLPSPRMQLA
WLLSHIEDFTGSGIIYTLTVSAAEDIARMLREAGHQVAAYTGRTDLEERERLEAALKNNE
VKALIATSALGMGFDKPDLGFVIHIGAPSSPVAYYQQVGRAGRGSINADVLLLPGTDDAE
IWEYFATSSMPDQVRATAVLEALGQADGAMSVPALESAVNLRRSPLELLLKVLAVDGAVE
RVAGGWMRTDLPWSYDADRYKRVAASRVHEQRLMIDYENTRGCRMEFLTASLDDPRSAAC
GRCDNCAGAWYNDHIPEESKDNAQNALGRAGVSIEPRKLYPSGLNRLGHTLKGKIPEDEQ
VSIGRALARLTDLGWGNRLRQLFADPADHPIDKAMFEACIKVLSEWNWEQRPVGVVAMPS
STRPQLVTSLAQQLAAVGRLRYLGQLEYRGKPPQNGPGGNSAFRVAAVADAFEIPEPLEA
LLANAPGPVMLVDDLTDSRWSLAMAGRALRIAGAPGVLPFTLGIAG
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggatgcctcactgcactcggacctgctgtcctccgccacggccaagctgcgcgccctg
gtgcgcaacccggacgcgcagttccacgatggccagttcgaagcgatcagcgcgctggtg
gcccagcgccgccgcgccctggtggtgcagcgcaccggctggggcaagtccgcggtgtac
ttcatcgcctcgctgctgttgcgcgagcagggcttcgggccgacgctgatcgtctccccg
ctgctggcgctgatgcgcgaccaggtggccgccgccgaacgtgcaggggtgcgggccgcg
gcgatcaactccgcgaacgtgcttgaatggcgcgagatcctggagaagctgcaacgcgac
gagatcgacgtgctgctggtctccccggaacggctgaacaacccgtccttccgcgaacag
cagctgccgatgctgctggaccgactgggtctgctggtgatcgacgaggcgcactgcatc
tccgactggggccacgacttccgccccgactaccgccgcatccgcgatttgatcaacaag
ctgcctgccgggctgccggtgctggcgaccaccgcgacggccaactcccgggtggtggag
gacgtggccgagcagctggccgggggagcgggggaagtattcaccctgcgcggcacgctg
gcccgcgattcgctgcgcctgggggtgctgcggctgccgtccccgcgcatgcagctggcc
tggctgctgagccatatcgaggatttcaccggttcgggcatcatctacacgctcacggtc
tccgccgcggaggacatcgcccggatgctgcgcgaagccggccaccaggtggccgcctac
accgggcgcaccgatctggaagagcgcgaacgcctggaagcggcattgaaaaacaatgag
gtcaaggccctcatcgccaccagcgcgctgggcatgggtttcgataagccggatctgggt
ttcgtgatccacatcggcgcccccagctctccggtggcctactaccagcaggtcggccgc
gccggccgcggcagcatcaacgccgacgtgctgctgctcccggggaccgacgacgctgag
atctgggagtacttcgccaccagctccatgcccgaccaggtgcgcgccaccgcggtgctg
gaggcgctgggccaggccgacggagcgatgagcgtcccggcgctggagagcgcggtgaac
ttgcgccgttccccgctggaactgctgctgaaggtgctggccgtggatggcgccgtggaa
cgcgtggccggcggctggatgcgcaccgacctgccttggtcctacgacgctgaccgctac
aagcgcgtggccgccagccgcgtgcacgaacagcggctgatgatcgactacgagaacacc
cgcggctgccgcatggagtttttgaccgcgtcgttggacgacccgcgctccgctgcctgc
gggcgctgcgacaactgcgccggcgcctggtacaacgaccacattcccgaagagtccaag
gacaacgcgcaaaatgccctgggacgcgccggggtgagcattgaaccgcgcaagctctat
ccctctggactgaatcggctggggcacacgctcaagggcaagattcccgaggacgagcag
gtctcgatcggccgggcgctggcgcgcctgaccgaccttggctggggcaaccggctgcgc
cagctcttcgctgatcccgccgaccacccgatcgacaaggcaatgttcgaggcctgcatc
aaggtgctctcggaatggaactgggaacagcgcccggtgggcgtggtggcgatgccgtcc
tccacccgcccgcagctggtcacctcgctcgcgcagcagctggccgccgtgggtcggctg
aggtacctgggacagcttgaataccgggggaagccgccgcagaacgggccgggcggcaac
tcggccttccgtgttgcggcggtggccgatgccttcgagatcccggaaccgctcgaggcg
ctgctggccaatgccccggggccggtcatgctggtcgacgacctgaccgattcgcggtgg
tccttggccatggccggaagggccctgcgcatcgccggggctcccggtgttttgcctttc
actttgggaatcgctgggtaa
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