Aeromonas salmonicida subsp. salmonicida A449: ASA_1881
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Entry
ASA_1881 CDS
T00500
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asa
Aeromonas salmonicida subsp. salmonicida A449
Pathway
asa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ASA_1881 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asa03400
]
ASA_1881 (mfd)
Enzymes [BR:
asa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ASA_1881 (mfd)
DNA repair and recombination proteins [BR:
asa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ASA_1881 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABO89956
UniProt:
A4SM34
LinkDB
All DBs
Position
complement(1991077..1994541)
Genome browser
AA seq
1154 aa
AA seq
DB search
MMPMKLPALPAKAGQKLTLGQLTGSSLSLVAARLTTQANRPVLLVTADTPSALRLEQELQ
FLLADQGCPVLMFPDWETLPYDTFSPHQDIISQRLETLYKLPQMSAGVLIVPISTLMLRC
APQVYLDKYSLMVKAGQRLNLQQLRGRLAEAGYVAVDQVLEHGEFAARGSLLDLFPMGSN
SPYRIDFFDDEVDSIRPFDPETQRSSEPVKTVSLLPAREFPTDEAAIELFRGQFREQFEL
SRAEGSVYQEVSKGRWPAGIEYYLPLFFHQTASLFDYLPDNTLLLTVGDIYPAAQRFWND
IGQRYEDRRWDNTRPLLPPQQIYLPVEQLFAALGHYGAVRLQEAATDGGAGQHDLPIAAL
PELQLDHSKEQPMLALNQFLDSFTGRTLFVVESEGRREVLGDLLARISLQPKEFPSLDAF
IAGKARHGLLVAPLERGFLLQEAGHDELALITETELLGGKVRSKRAREKNKNLSSDAVIR
NLGELTQGQPVVHLDHGVGRYLGLETIDAGGLPTEFLTLEYAGGDKLFVPVTNLHLISRY
TGSDNPPSHKLGGEAWVKARRKAAEKVRDVAAELLDVYALRAARHGFAFQHDREAYRQFA
AGFPFEETEDQLNAINAVLGDMCQAKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAV
LVPTTLLAQQHYDNFRDRFANWPVRVEVLSRFRTAREQTSVMKELADGKVDIIIGTHKLL
GSDLTFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMAGMRDLS
IIATPPAKRLAIKTFVRQQDPAVTREAVLRELKRGGQVYYLHNDVESIEKCAGDLAELVP
EARIGIAHGQMRERDLERVMSDFYHQRFNLLVCTSIIETGIDVPSANTIIMDRADHLGLA
QLHQLRGRVGRSHHQAYAYLLTPHPKLMSKDALKRLEAIASLEDLGAGFALATHDLEIRG
AGELLGDDQSGQIESVGFTLYMEMLEQAVEALKNGKEPSLEQLMSQHTEVELRLPALLPE
EYIPDVNMRLSMYKRIASAADEQELRELKVELIDRFGLLPEATKTLMEIAAFRQRATALG
IRRVEMSERGGYLDFTQDTRVNPGYLVKLLSEQPRIYKMDGPTRLRFQVPTPDRAMRLKL
VDGLLADLANHASH
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgatgccaatgaagcttcccgccttgcccgccaaggcgggccaaaagttaacgctcggc
cagttgaccggcagcagcctttcactggttgccgcccgccttaccacccaagcgaaccgc
ccggtcctgctggtgaccgccgataccccgagtgccctgcgcctcgagcaggaattgcag
ttcctgctggccgatcaaggttgccctgtgctgatgttcccggattgggaaaccctgccc
tacgacaccttttccccccatcaggacatcatctcccagcgactggagaccctctacaaa
ctgccgcaaatgagcgccggcgtgctgatcgtgcccatctcgaccttgatgctgcgctgc
gccccccaagtctacctcgacaagtacagcctgatggtgaaggccggtcagcgcctcaac
ctgcaacagttgcgaggacgtctggccgaggcaggctatgtggcggtggatcaggtgctg
gagcacggcgagtttgccgcccgcggctcactgctcgatctctttcccatgggcagcaac
agcccctatcgcatcgactttttcgatgacgaggtggactccatccgtccgttcgatccc
gagacccagcgttccagcgaaccggtcaagacggtcagcctgttgcccgcccgggaattc
cccaccgacgaggccgccatcgagctgttccgtgggcaatttcgcgaacagttcgagctg
tcgcgcgcggaaggctccgtctatcaggaagtgagcaaggggcgctggcccgccggcatc
gaatactacctgccgctcttcttccatcagaccgccagcctgttcgactacctgccggac
aacaccctgctgctcacagtgggggatatctatcccgcggcccagcgcttctggaacgac
ataggccaacgctatgaggacaggcgctgggacaacacccgccccttgttaccaccccag
cagatctacctgccggtggagcaattgttcgccgccctcggtcactatggcgccgtgcgg
ctgcaggaagccgccaccgacggcggcgccggccagcatgatctccccatagccgcgctg
ccggagctgcaactggatcacagcaaagagcagcccatgctggcgctgaaccagtttctg
gacagcttcacgggccgcaccctgttcgtggtggaatcagaaggacggcgggaagtgctc
ggcgatctgctggcgcgcatatccttgcaacccaaggagttcccctcgctggatgccttc
atagcgggcaaggcgcgccacggtctgctggttgcaccgctggagcggggttttctgcta
caagaggccgggcatgatgagctcgcccttatcacggagacagagctgctgggcggtaaa
gtccgcagcaagcgagcccgggaaaagaacaagaacttaagctcggatgcggtgatccga
aacctcggcgagttgacccagggccagcctgtggttcacctggatcacggcgtcggccgg
tatctggggctcgaaaccatcgatgccggtggcctgcccaccgagttcctgaccctcgag
tatgccggtggcgacaagctgttcgtgccggtcaccaacctgcacctcatcagccgctac
acaggctctgacaacccgcccagccacaaactcggcggcgaggcctgggtcaaggcgcgg
cgcaaggcggcagagaaggtgcgcgacgtggcagccgagctgctggatgtctatgccctg
cgggcggcgcgccacggttttgccttccagcacgacagggaggcctaccgccagttcgcc
gccggtttcccgttcgaggaaacagaggatcagctcaacgccatcaatgcggtactgggg
gacatgtgtcaggccaagagcatggaccggctggtgtgcggcgacgtgggctttggcaag
acagaagtggcgatgcgagccgccttcgtggcggtccatggcggcaagcaggtcgccgtg
ctggtgcccaccaccttgctggcccagcagcactacgacaacttccgtgatcgcttcgcc
aactggccggtgcgggtcgaggtgctgagccgctttcgtaccgccagggagcagaccagc
gtgatgaaggagctggccgatggtaaggtcgacatcatcataggtacccacaaactcttg
ggctcagatctgaccttcaaggatttggggctgctcatcgtcgatgaggagcacagattc
ggggtgcgtcagaaggagaagatcaaggcgctgcgggccgacgtcgatatccttaccctc
acggcgacgcctatcccgcgcaccctcaacatggcgatggccggcatgcgggatctctcc
atcatcgccaccccgcccgccaagcggctcgccatcaagacctttgtgcgccagcaggat
cctgcggtcacccgcgaggcggtactgcgtgagctcaagcgcggtggtcaggtctactac
ctgcacaacgacgtggagagcatagaaaaatgcgccggcgatctcgccgagctggtgccg
gaggcccgtatcggcatcgcccacggccagatgcgcgaacgcgatcttgagcgagtcatg
tcggacttctaccaccagcgcttcaacctgctggtctgcacctccatcatagagaccggc
atagacgtccccagcgccaacaccatcatcatggatcgcgccgatcatctggggctggcc
cagttgcaccagttgcggggccgggttggccgctcccaccaccaggcctatgcctacctg
ctcacccctcatcccaagttgatgagcaaggatgcgctcaagcggctcgaggccatcgca
tcgctcgaagatctcggcgccggttttgcgctggcgacccacgatctggagatccggggt
gcaggcgagctcttgggcgacgatcagagcggccagatcgaatcggtcggtttcactctc
tacatggagatgctggagcaggcggtcgaggcgctgaaaaatggcaaggagccatcgctg
gagcagctgatgagtcagcacacagaggtcgagctgcgcctgcccgccctgttgccggag
gaatacataccggacgtcaacatgcgtctgtccatgtacaagcgcatcgccagcgcggcc
gacgagcaggagctgcgcgaattgaaggtggagctgatcgaccgcttcggcctgctgccg
gaggcgaccaagacgctcatggagattgcggccttccgccagcgcgccaccgcccttggc
attcgccgggtggagatgagcgagcgcggcggttacctggacttcactcaggatactcgc
gtcaaccctggctatctggtcaagctgctctccgagcagccacgcatctacaagatggat
gggcccacccgattgcgcttccaggtaccaaccccggaccgcgccatgcgtctgaaactg
gtggacggcctgctggcggatctcgccaaccatgccagccactga
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integrated database retrieval system
