Aeromonas salmonicida subsp. salmonicida A449: ASA_2064
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Entry
ASA_2064 CDS
T00500
Symbol
rne
Name
(GenBank) ribonuclease E and G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
asa
Aeromonas salmonicida subsp. salmonicida A449
Pathway
asa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASA_2064 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asa03019
]
ASA_2064 (rne)
03009 Ribosome biogenesis [BR:
asa03009
]
ASA_2064 (rne)
Enzymes [BR:
asa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ASA_2064 (rne)
Messenger RNA biogenesis [BR:
asa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ASA_2064 (rne)
Ribosome biogenesis [BR:
asa03009
]
Prokaryotic type
rRNA processing factors
ASA_2064 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ABO90131
UniProt:
A4SMK9
LinkDB
All DBs
Position
2189982..2193044
Genome browser
AA seq
1020 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSGLTVPDGMGLIVRTAGVGKSPEEL
EWDLNVLLNHWDSIHKASQDRTAPVLIHQESNVIVRAIRDYLRRDVGEILIDDPVIFERA
RAHIELVRPDFLNRVKLYKGEVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RLREAVHQDRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLAL
SILRLIEEEAMKDNTEQVHAQVPVDVAAYLLNEKRASIASLEQRNEVRLYIIPNQHLETP
HYEVTRIRQNEIPEAASYELKTEIAKPVYQPKQTQVIEREQPLLQGFVQAPQPAAPAAVA
APVAAPAPVAAKAEAGLFGKLFKAISGLFGSDAAPADVKAPAEKPAVQREARKDEAHRHQ
RDDTRGRGQRPRRDDNRNSRNTAEAGEKREAAANREGGESRNRRPRKEREPRQERETRTE
VRSEQRVEREPREPRQEREPRAPRPAREPRAPREPRAEAVVEAVEIVETAVVSAEPQQEK
EQKVAERRERRQLRKQIRADVPASDVAVVPTEAPVAVVADTVEQSDEQADGQRRSRRTPR
TQRIEGQRRKRINEDARSQRDDEEPQADTATMTTAAQADAAQVKVEDPAVPVVTIPSAAA
IAAAVQASSALTEHVVAEAVAEEAREQAEAAVAVVAAPVEIMTAEVVAATPAVEAPVVAE
AAPVAEAATIEAAPAVIETAPVVTADVAVVEPVAEPAAEQPVAKVAVAAPVAKQVNKGAG
LLASARKASAPMATPAAAPAQPEREPVEQAPLVRSEVASSGRHAGSTAAVNVATSPAGRP
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaacgcgactcaggaagaggagttgcgcgtagcgctggttgac
ggacaacagctctacgatttggatattgaaagtccgggccatgagcagaaaaaagcgaac
atctacaagggtaagatcacccgcgtagaacccagtctcgaagctgcttttgtcgactac
ggcgctgaacgccacggtttcctgccgttaaaggaaatcgcccgcaattacttcccctcc
ggttattcctatcagggtcgtcccaacatcaaagaagtggtccgcgaaggccaggaagtg
atcgtccagatcgataaagaagagcgtggcaccaagggtgcagccctcaccacctttatc
agcctggccggtagctacctggtgctgatgccgaacaacccccgtgcaggcggtatctcc
cgccgcattgagggcgatgaacggacagaactgaaagaagccctgagcggactgacagtg
ccggacggcatgggcctcatcgtgcgtaccgccggtgttggcaaatccccggaagagctg
gaatgggatctcaacgttctgctcaaccactgggattccatccacaaggcgtcacaggac
cgaactgctcccgtacttatccaccaggaaagcaacgtgatagtacgcgccattcgtgac
tacctgcgtcgcgatgtcggcgagatcctgatcgacgaccctgtcatctttgaacgtgcc
cgtgctcacatcgagctggttcgtcccgatttcctcaaccgcgtgaagctgtacaagggt
gaagttgccctgttcaaccactttcagattgagagccaaatcgagtcggccttccagcgc
gaagtgcgcctgccctccggcggcagcatagtcatagacccgaccgaagcactgacctcc
atcgatatcaattcctcccgcgccaccaagggcggcgatatcgaagagacggcgctgcaa
accaacctggaagcggccgatgaaattgcccgtcaattgcgtctgcgcgacctgggtggc
ctgatcgtcatcgacttcatcgacatgacgccggttcgccatcagcgcgaagtggaaaac
cgtctgcgtgaagcggtacatcaggaccgcgcccgcatccagctgggccgtatctcccgt
ttcggtctgctggaaatgtcccgtcagcgtctgcgcccctccctcaacgagtcaagcagt
catatctgcccccgttgccagggccagggggtcatccgtgacaacgaatcactggccttg
tccatactgcgtctcatcgaagaagaggccatgaaggacaacacagagcaggttcatgct
caggtgccggtcgatgttgccgcctatctgctcaacgagaagcgcgcctccatcgccagt
ctggaacagcgtaatgaagtacgtctgtacatcattcctaaccagcacctggaaaccccg
cactacgaagtgacccgcatccgtcagaacgaaatcccggaagcggccagctacgagctg
aaaaccgagattgccaagccggtctaccagccgaagcagactcaggtgatcgagcgtgag
caaccgctgctgcaaggcttcgtccaggcacctcaaccggctgcgccggctgcagttgct
gcccccgtcgcggcgccagcccccgttgccgccaaagcggaagcgggtctgtttggcaaa
ctgttcaaggccatttcaggtctgttcggttccgacgcagcccctgccgatgtcaaggca
ccagccgagaaaccggcagtgcaacgggaagcacgcaaggacgaggctcatcgtcatcag
cgtgatgacacccgtggccgtggtcagcgtccccgtcgtgacgacaaccgcaacagccgc
aacacagctgaagcgggtgagaagcgcgaagccgccgccaaccgcgagggtggcgaaagc
cgcaaccgtcgtccgcgcaaagagcgtgagccccgtcaggaacgtgaaactcgcactgaa
gtacgcagcgagcagcgagtggaacgtgagccccgcgaaccgcgtcaggaacgtgaaccg
cgtgccccgcgtccggctcgtgagccccgtgcaccgcgcgagccccgtgccgaggcggtc
gttgaagcagtagaaatcgttgaaactgccgttgtcagcgccgagccgcagcaggaaaaa
gagcagaaagtcgccgagcgccgcgaacgtcgtcaactgcgcaagcagatccgtgccgac
gtaccggccagcgatgttgctgttgtgccgaccgaggctcccgttgctgtcgtggcggat
accgttgagcagagtgacgagcaggccgacggccagcgtcgttcccgtcgcaccccgcgc
actcagcgtatcgagggtcaacgccgcaagcgcatcaacgaagatgcccgcagccagcgt
gatgatgaagagccgcaggccgacactgcaaccatgaccacagccgcccaggcggatgct
gctcaggtgaaggtggaagatccggctgtgcctgtcgtcaccatcccgagcgccgctgcc
attgccgctgccgtacaagcctcttccgctctgaccgagcacgtagtggcagaagccgtt
gccgaagaagctcgtgagcaagcagaagccgccgtagccgtagttgcagcacctgtcgag
atcatgactgctgaggtcgttgcagcaacgcctgcggttgaggcccctgttgttgccgaa
gcagcccctgttgccgaagctgcgaccattgaggcagctcctgctgtcatcgaaactgcg
ccggtcgtgactgctgacgttgctgtggttgaaccggttgctgagcctgcggctgaacag
cctgtcgccaaggtggctgttgcagctccagtggccaagcaggtcaacaagggtgccggt
ctgctggccagcgctcgcaaggcttcagccccgatggcaacgcctgctgcagcgccagcc
cagccggagcgtgagccggtagagcaagcaccgctggttcgcagcgaagtggcaagctct
ggccgtcatgcgggcagtactgctgccgtcaatgtggcaaccagcccggctggtcgtcct
tga
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