Aeromonas salmonicida subsp. salmonicida A449: ASA_2264
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Entry
ASA_2264 CDS
T00500
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
asa
Aeromonas salmonicida subsp. salmonicida A449
Pathway
asa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASA_2264 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asa03019
]
ASA_2264 (rhlE)
Enzymes [BR:
asa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ASA_2264 (rhlE)
Messenger RNA biogenesis [BR:
asa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ASA_2264 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABO90315
UniProt:
A4SN43
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All DBs
Position
2393822..2395213
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AA seq
463 aa
AA seq
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MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAVLAGQDVLGGAQTGTGKTAGFTLPML
HRLMANHGRGGRRQVRALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLEA
IKLGVDILVATPGRLLDLLTQRALTLTELEVLVLDEADRMLDMGFITDIRRIMKALPEER
QTLLFSATFSNEIKELADDLLKSPTLIEVSPSNSTAEQVNQRIIKVDRERKRELLSHMIG
RNNWQRVLVFVRTKQIADRLAHQMEKDGLNTVAIHGDKSQGARNRALADFREGKVRVLVA
TDIAARGLDIDQLPHVINFELPQVAEDYIHRIGRTGRAGRGGEAISLVSQDEQDQLKAIE
SLIGLSIPSEILAGYEPSGKPTRQTLPGSKPVQNPPRDRGHANAKHNAKAPAKGSKGKPK
ADGSKQPAPARQKDRGGVDAGLTPMRRLPRAQRDSYQDNSNEE
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaacgaactgggtctgtcaccgcacattctgcgggccgtcaaggaattgggt
tacgaacagccaacccccatccagcagcaagccattccggctgtgctggcaggccaggat
gtgctgggcggcgcccagacaggcacaggtaaaacggccggtttcaccctgcccatgttg
caccgtctgatggccaaccatggccgtggtggccgtcgtcaggtacgcgccctggtgctg
accccgacccgtgaactggccgcccaggtgggcgaaagcatcatcaagtacgcccatcac
ctgccgtttcgcaccctgatcgcctacggcggcgtcagcatcaagcccaacctggaggcc
atcaagctcggcgtcgacatcctggtcgcgaccccgggccgcctgctggatctgctgacc
cagcgcgccctcaccctgaccgagctggaagtgctggtgctggatgaggcggatcgcatg
ctcgacatgggcttcatcaccgacattcgccgcatcatgaaggcgctgccggaagagcgg
cagaccctgctgttctccgccaccttctccaacgagatcaaggagctggccgacgatctg
ctgaagagcccgaccctgatcgaggtgagcccgagcaacagcacggccgagcaggtcaac
cagcgcatcatcaaggtcgaccgcgagcgcaagcgcgagctgctctcccacatgatcggc
cgcaacaactggcaacgggtgctggtgttcgtgcgcaccaagcagatcgccgaccgtctc
gcccaccagatggaaaaagacggcctcaataccgtcgccatccacggtgacaagagccag
ggtgcccgcaaccgggcgctggcggattttcgggaaggcaaggtacgggtgctggtcgcc
accgacatcgccgcccgtggtctcgatatcgatcagctgccccatgtgatcaacttcgag
ctgccgcaagtggccgaggattatatccaccgcatcggtcgtaccggccgtgccggtcgt
ggcggcgaagccatctctctggtcagccaggatgaacaggatcaactcaaggccatcgag
tccctgatcggcctcagcataccgagcgagatcctggccggttatgagccgagcggcaaa
ccgactcgccagaccctgccgggcagcaagccggtacaaaacccgccgcgggatcgcggc
catgccaacgccaagcacaatgccaaggcgcccgccaaaggcagcaaaggcaagcccaaa
gccgatggcagcaagcaaccggcgccggcgcgccagaaggatcgcggtggcgtggacgca
gggctcaccccgatgcgccgcctgccccgggcccagcgcgacagctatcaggacaactcc
aacgaggagtaa
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