Aeromonas salmonicida subsp. salmonicida A449: ASA_3610
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Entry
ASA_3610 CDS
T00500
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
asa
Aeromonas salmonicida subsp. salmonicida A449
Pathway
asa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASA_3610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asa03019
]
ASA_3610
Enzymes [BR:
asa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ASA_3610
Messenger RNA biogenesis [BR:
asa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ASA_3610
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
CMS1
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
ABO91571
UniProt:
A4SRP9
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All DBs
Position
3901925..3903178
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AA seq
417 aa
AA seq
DB search
MSIASFAELALSPRLQQTLSELGYAAPTPIQARAIPVILTGRDLMAGAQTGTGKTAAFVL
PLLEQLMQHPASDTARPIRALVLVPTRELAVQVFDSVVRYGQGTGLTSALVYGGVSIAAQ
VEALQAGVDLLIATPGRLLDHLRQGALSLEHLSHLVFDEADRMLDMGFMDEIKALLKQIP
ADRQTLLFSATCDDNLFALSRVLLRDPELIEVAPRNTTAAEVEQRVYAVDGERKVALVEH
LIKVKGWAPVLIFSRTRQGADKLAQQLGKAGINALAFHGDLSQGAREKVLLAFRAGTLQA
LVATDVAARGLDILDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLE
KVEAVLDTRLPQQWFPGFEPDLTRFEPEPRRSGKAAQKQRARKQALGGGNKGGKGKR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgtccattgcctcctttgccgaactggccctctccccccgtctgcagcagaccctgagc
gagctcggttatgccgcgcccactcccattcaggcccgcgccatccccgtcattctgacg
gggcgggatctgatggcgggggcccagaccggcaccggcaagaccgccgcctttgtgctg
ccgctgctggagcaactgatgcaacacccggcgagcgacaccgcccgcccgatccgcgcg
ctggtgctggtgccgacccgcgagctggcggtgcaggtctttgatagcgtggtgcgctac
gggcaaggtacgggtctcaccagcgccctggtctacggcggagtcagcatagccgcccag
gtagaggcgcttcaagccggggtggatctgctgatcgccaccccaggtcgcctgctcgac
catctgcgtcagggggccttgagccttgaacacctcagccatcttgtgtttgacgaggcg
gaccgcatgctcgacatgggctttatggacgagatcaaggcgctgctcaaacagataccg
gcggatcgccagaccctgctgttttcggctacctgcgacgacaacctgtttgccttgagc
cgtgtgctgctgcgtgacccggaactgatcgaagtggcaccgcgcaacacaacggcggcc
gaggtggagcagcgggtctatgcggtggatggcgagcgcaaggtggcgttggtggagcac
ctgatcaaggtgaagggctgggcgcccgtacttatcttcagccgtacccgccagggggcc
gacaaactggcccagcagctcggcaaggcgggcatcaatgcgctcgccttccacggcgat
ctgtcgcaaggcgcgcgagaaaaagtgctgctggcgtttcgtgccggcaccctgcaagcc
ctggtcgccaccgacgtggctgcccgcggtctcgatatcttggatctcaactacgtgatt
aacctggagttcccgtttgtggccgaagattacgtccaccgcatcggtcgtaccggccgc
gcaggcaacaaggggctcgccatcacattgttcagcccggaagatgcgcctctgctggag
aaggtggaagctgtgctcgacacccgattgccccagcagtggttcccgggctttgagccg
gatctcacccgcttcgaacccgagccacgccgcagcggcaaggcagcccagaagcagcgc
gccagaaagcaggccctcggcggcggtaacaagggcggcaagggcaagcgttaa
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