Aeromonas sanarellii: KXJ75_11805
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Entry
KXJ75_11805 CDS
T08465
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
asaa
Aeromonas sanarellii
Brite
KEGG Orthology (KO) [BR:
asaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asaa03019
]
KXJ75_11805 (hrpA)
Enzymes [BR:
asaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KXJ75_11805 (hrpA)
Messenger RNA biogenesis [BR:
asaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KXJ75_11805 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
ResIII
nSTAND3
AAA_23
AAA_30
PhoH
HA2_N
NTPase_1
NACHT
T2SSE
TsaE
SLFN-g3_helicase
AAA_25
SRP54
Motif
Other DBs
NCBI-ProteinID:
QXW31561
LinkDB
All DBs
Position
2467712..2471611
Genome browser
AA seq
1299 aa
AA seq
DB search
MSLSIEALRRRLTACMNLDARRLSSRLHGVKKLPEAKQGQVLETIAAELDAAQAHYQSRL
AGVPMVTYPDNLPVSQKQAEIAKAIQDHQVVIIAGETGSGKTTQIPKICLALGRGVKGFI
GHTQPRRLAARTVAARIAEEMESELGHYVGYKVRFTDQVSEQTHIKLMTDGILLAEIQND
RMLTQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPQRFSRHFNKAP
VIEVSGRTYPVEVRYRPLTSDKSEGLEERDELQGIFDAVEELAREGLGDILVFMNGEREI
RDTADALRKLNLRDTEVLPLYARLSNAEQNKVFQLHAGRRIVLATNVAETSLTVPGIRYV
IDPGTARISRYSWRTKVQRLPIEPVSQASANQRKGRCGRVADGICIRLYSEEDFNGRPAF
TDPEILRTNLASVILQMLALGLGNMEAFPFVEPPESRHIKDGLTLLKELEAVRELPAAGD
REAKLQLTEIGRQLSRIPLDPRLAKMVISAAQTGCLSEVMVITAALSIQDPRERPMEKKQ
AADEQHRRFEDKDSDFLAFVNLWNYLKEQQDLLGSNPFRRLCQKEFLSYLRVREWQDIHF
QLRQTVKELGFKANHEPADFKTVHCALLTGLLSHIGNKDLEKPEFLGARNGRFHLFPASG
LFKKPPKWVMAAELVETSRLYARINARIEPEWVEPLAGHLIKLHHSDPHWSKKNGAVMAK
EKVTLYGLTLVAERTINFSRIDPALCRELFIRRALVEGDFETRHRFFSDNRKLLAEVEAL
EHKSRRRDILVDDEDLFRFYDARLPEDVISARHFDKWWKEAQKQDPELLNFEKEMLMKGD
AAHISDLDYPNFWQQGRLKLKLTYQFEPGEAADGVTLHIPLPLLNQVEVKGFEWLIPGLR
HELLVALIKSMPKPMRKNFVPAPNYADALLASINPEQGPLLDEMERQLRRMTGVTVPRES
WDWAAVPDHLKLTFRVVDDKYKKVAEGKDLEALKESLRGKVQETLSQVADDDIEQSGLTL
WSFGELPQEYSQKRGGFEVKAYPALVDEKDSVAIQLVESPVVQQQLMWAGQRRLVLLNVP
SPIKYLQEKLPNKAKLGLYFNPFGKVAELIDDCIACGCDKLIEQHGGMAWDEAGFEALKE
YVRAELNDAVVEVAKQVEAVLTLSHEIKKRLKGKMQLDTAFAMSDIQLQLDKLIHKGFVT
ETGWQRLPDLLRYLRAIERRLEKLAIDPNRDRVYMLKVQSVESEYKALLAKIPKSQPMPP
EVANIRWMIEELRVSFFAQQLGTPYPISDKRVQSAIAQC
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
ttgtctctctctatcgaggcgctgcgccgccgcttaaccgcctgcatgaacctcgacgcc
cgccgtctctccagccgtctgcacggcgtcaagaagttgccggaagccaagcaaggccag
gtgcttgagaccatagccgccgagctggatgcggcccaggcgcactatcagtcacgtctg
gcgggcgtccccatggtcacctatccggacaacctgccggtgagccagaagcaggcggag
atcgccaaggccattcaggaccatcaggtggtgatcatcgccggggaaaccggctcgggc
aagaccacccagatccccaagatctgcctggcgctcgggcgcggggtcaagggctttatc
ggccacacccagccgcgccgcctcgcggcccgcaccgtggcggcccgcatcgccgaagag
atggagtctgagctcggacattacgtgggctacaaggtgcgctttaccgatcaggtgagc
gagcagacccacatcaagctgatgaccgacggtatcctgctggcggagatccagaacgac
cggatgctgacccagtacgacaccatcatcatcgacgaggcccacgagcgcagcctcaac
atcgatttcatcctgggttacttgaaacaactgctgcccaagcgcccggatctcaaggtg
atcatcacctcggccaccatagacccacagcgtttctcccgtcatttcaacaaggcgccg
gtgatcgaggtatcaggccgcacctacccggtggaggtgcgttaccgcccgctcaccagt
gataaaagtgaggggctggaggagcgcgacgagctgcaggggatcttcgatgcggtggaa
gagttggctagagaaggtttaggagacatccttgtcttcatgaacggcgagcgggagatc
cgcgacaccgccgacgccctgcgcaagctcaacctgcgcgacaccgaggtgctgccgctc
tatgcccgcctctccaacgccgagcagaacaaggtgttccagctccacgccgggcggcgc
atcgtgctcgccaccaacgtggcggagacctcgctgacggtgccgggcattcgttacgtg
atcgatccgggcaccgcccgtatcagccgctactcctggcgcaccaaggtgcagcgcctg
cccatcgagccggtctcccaggccagcgccaaccagcgtaaagggcgttgcggccgggtg
gcggacgggatctgcatccgcctctactcggaggaggatttcaacggccgcccggccttc
accgaccccgagatcctgcgcaccaacctggcctccgtcatcctgcagatgctggcgctc
ggccttggcaacatggaggccttccccttcgtcgagccgccggagtcgcgccatatcaag
gatggcctgaccctcttgaaagagctggaggcagtgcgcgagctgcccgccgcaggcgat
cgcgaggccaagttgcagctgaccgagattggtcgccagctctcgcgcatcccccttgat
ccccgtctggcgaagatggtgatcagcgcggcgcagaccggctgcctgagcgaggtgatg
gtgatcaccgccgccctcagcattcaggacccccgcgagcggcccatggagaagaagcag
gccgccgacgagcagcacagacgcttcgaagacaaggattccgacttcctcgccttcgtg
aatctgtggaactacctgaaagagcagcaggatctgctcggcagcaacccgttccgccgc
ctgtgccagaaggagtttctctcctacctgcgggtgcgcgagtggcaggacatccacttc
cagttgcgtcagacggtcaaagagctgggttttaaagccaaccatgaaccggcggacttc
aagacggtgcactgcgccctgctgaccggcctcttgagccatatcggcaacaaggatctg
gaaaagcccgaattcctcggggcccgcaacggccgtttccacctgttcccggcctcgggt
ctgttcaagaagccgcccaagtgggtgatggccgcagaattggtggaaacctcgcgcctc
tacgctcgcatcaacgccaggattgaacccgagtgggtggagccgctggcgggccacctc
atcaagctgcaccacagcgacccccactggtcgaagaaaaacggcgccgtgatggccaag
gagaaggtgaccctctatggcctgaccctggttgccgagcgcaccatcaacttcagccgc
atcgatccggccctgtgtcgcgagctgtttatccgccgcgccctggtggagggggatttc
gagacccgccaccgcttcttcagcgataaccgcaagctcctggccgaggtggaggcgctg
gagcacaagtcgcgccggcgcgacattctggtggatgacgaggacttgttccgcttctac
gatgcccgtttgccggaggatgtgatttccgcccgtcacttcgacaagtggtggaaggag
gcgcaaaagcaggatcccgagctgctcaacttcgagaaagagatgctgatgaagggggac
gcggcccacatcagcgatctcgactaccccaacttctggcagcaggggcgtctcaagctc
aagttgacctaccagttcgagccgggggaggcggcggacggcgtgaccctgcatattccg
ctgccgctcctgaaccaggtggaggtgaaagggttcgagtggctaatccccggcttgcgc
cacgagctcttggtggccctcatcaagtcgatgcccaagccgatgcgcaagaacttcgtg
ccggcccccaactacgccgatgcgctgctcgccagcatcaatcccgaacaggggccgctc
ttggacgagatggagcgtcagctgcgccgcatgacaggcgtgaccgtaccccgcgaatcc
tgggactgggctgcggtgcccgatcacctgaaactcaccttccgggtggtggacgacaaa
tacaagaaggtggcggaaggcaaggacctggaggcattgaaagagtccctgcgcggcaag
gtgcaggagaccctgtcacaagtggcggacgatgatatcgagcagtctggtctcaccctg
tggagctttggcgagttgccccaggagtacagtcagaagcggggcgggttcgaggtgaaa
gcctatccggcgttggtagacgagaaggattcggtcgccatccagctggtggagagtccg
gtggtgcaacagcagctgatgtgggcgggccagcgccggctggtgctgctcaacgtaccg
tcccccatcaagtacctgcaggagaagctgcccaacaaggccaagctgggcctctatttc
aacccctttggcaaggtggccgagttgattgacgactgcattgcctgcggctgtgacaag
ctcatcgagcagcacggcggcatggcctgggacgaggccggtttcgaggcgctcaaggag
tatgtccgcgccgagctcaacgacgccgtggtggaggtggccaagcaggtggaagccgtg
ctgaccctctcccatgagatcaagaaacggctcaagggcaagatgcagctcgataccgcc
tttgccatgtcggacatccagctgcagctggacaagctcatccacaaaggcttcgtcacc
gagaccggctggcagcggctgccggatctcttgcgctacctgagggccatcgagcggcgt
ctggagaagcttgccatcgatcccaaccgggatcgggtctacatgctcaaggtgcagagc
gtggagtcggagtacaaggcactgctggccaagatccccaaatcccagccgatgccaccc
gaggtggccaatatccgctggatgatagaggagctgagagtctccttcttcgcccagcag
ctggggacgccgtaccccatctcggataaacgggtgcagagcgccatcgcccagtgctaa
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