Aeromonas sanarellii: KXJ75_11900
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Entry
KXJ75_11900 CDS
T08465
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
asaa
Aeromonas sanarellii
Pathway
asaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KXJ75_11900 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asaa03019
]
KXJ75_11900 (rne)
03009 Ribosome biogenesis [BR:
asaa03009
]
KXJ75_11900 (rne)
Enzymes [BR:
asaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KXJ75_11900 (rne)
Messenger RNA biogenesis [BR:
asaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KXJ75_11900 (rne)
Ribosome biogenesis [BR:
asaa03009
]
Prokaryotic type
rRNA processing factors
KXJ75_11900 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
QXW31575
LinkDB
All DBs
Position
complement(2493701..2496865)
Genome browser
AA seq
1054 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSGLTVPDGMGLIVRTAGVGKSPEEL
EWDLNVLLNHWDSIHKASQQRSAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERA
KSHIELVRPDFLNRVKLYKGDVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RLREAVHQDRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLAL
SILRLIEEEAMKDNTEQVHAQVPVDVAAYLLNEKRTSIANLEQRNDVRVYIIPNQHLETP
HYEVTRIRQNEIPEAASYELKTEIAKPVYQPRQAQVIEREQPLLQGFAPAPQPVAPVAAP
TPVAAPAPVAEQTGFFGKLAKAFSGLFGSSTEAAPAETKAPAEKPAAQRDARKDEGHRHQ
RDESRSRGQRGRRDDNRGSRNAEAGEKREGAASRESGDRNRRPRKEREPRQEREPRQERE
ARGEVRSEQRMEREPREPRQEREPRAPRPAREPRAPREPRAEVVVEAVETQAAIAAVDAE
PRQEKEQKVAERRERRQLRKQIRVDIAATDSPALPVDEQAGDIAVVQAATVEQQDEQGEG
QRRSRRTPRSQRIEGQRRKRINEDARGQRDDEPQGEVQLTTAAQADAAQVKVEEPAVPVV
TIPSAEAVAAALQASAALTEHVVAEAIAEEAAEQAQAALAVKPVTETAERAVEPAAVVAV
AAVEEEAADVVTADPVVADVVVQADEAQPSAAVVAEPVMNEVVAEVEAAPAVTAEPVAPV
VAAEAEVVTTPEAVVAQPAPVAVPAAKTLSKGAGVLARARMASAPMATPAAAPAPAPRAP
VEYEPLVRSAVTTSGRHGGSTAASNVATSPAGRP
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaacgcgactcaggaagaggagttgcgcgtagcgctggttgac
ggacaacagctctacgatttggatattgaaagtccggggcatgagcagaaaaaagcgaat
atttacaagggcaaaatcacccgcgtagaacccagtctcgaagctgcttttgtcgactat
ggcgccgagcgccacggtttcctgccgttgaaggaaatcgcccgcaattacttcccctcc
ggttactcctatcagggtcgtcccaacatcaaagaagtggtccgtgaaggccaggaagtg
atcgtccagatcgacaaggaagagcgtggcaccaagggtgcggccctcaccacctttatc
agtctggccggcagctacctggtgctgatgccgaacaacccccgtgccggcggtatctcc
cgtcgcattgagggtgacgagcggaccgagttgaaggaagccctgagcggtctgaccgtg
ccggacggcatgggcctcatcgtgcgtaccgccggtgtaggcaagtctccggaagagctg
gagtgggatctgaacgtcctgctcaaccactgggactccatccacaaggcgtcacaacaa
cgttccgccccggtgttgatccaccaggagagcaacgtcatcgtgcgcgccatccgtgac
tacctgcgtcgcgatgtgggcgagatcctgatcgacaatccggtcatcttcgagcgcgcc
aagtcgcatatcgagctggtccgtcccgacttcctcaatcgcgtgaagctgtacaagggt
gatgtcgccctgttcaaccacttccagatcgagagccagatcgaatcggccttccagcgc
gaggtgcgtctgccctccggtggcagcatcgtcatcgatccgaccgaggccctgacctcc
atcgatatcaactcctcccgcgccaccaagggcggcgatatcgaagagaccgccctgcag
accaacctggaagcggccgacgagattgcccgtcaactgcgcctgcgcgacctgggtggc
ctgattgtcatcgacttcatcgacatgaccccggtgcgccatcagcgcgaggtggaaaac
cgtctgcgtgaagccgtgcaccaggaccgcgcccgcatccagctgggccggatctcccgc
ttcggtctgctggagatgtctcgccagcgcctgcgcccctccctcaacgagtccagcagc
catatctgcccccgttgccagggccagggggtcatccgtgacaacgaatccctcgccctc
tccatcctgcgtctcatcgaagaagaggccatgaaggacaacaccgagcaggttcacgct
caggtgccggtcgatgtggccgcctatctgctcaacgagaagcgcacctccatcgccaat
ctggagcagcgcaatgatgtgcgtgtctacatcattccaaaccagcatctggaaacgccg
cactacgaagtgacccgcatccgtcagaacgagatcccggaagcggccagctacgagctc
aagaccgagatcgccaagccggtctatcagcctcgccaggcgcaggtgatcgaacgcgag
cagccgctgttgcagggcttcgcaccggctcctcagccggtcgcccccgtcgccgccccg
acgcctgttgcggctcccgctccggttgcagaacaaaccggcttctttggcaagctggcc
aaggccttctccggtctgttcggctcctccaccgaggctgctccggccgagaccaaggct
cctgccgagaaaccggccgcccagcgcgacgcgcgcaaggacgaaggccatcgccatcag
cgcgatgagtcccgcagccgtggtcagcgtggccgtcgcgacgacaaccgcggcagtcgc
aatgccgaggccggcgagaagcgtgaaggcgcagccagccgcgagagcggtgatcgcaat
cgccgtccgcgcaaagagcgtgagcctcgtcaagagcgggaaccgcgccaggaacgggaa
gcccgtggtgaagtgcgcagcgaacagcgcatggaacgtgagccccgagagcctcgtcag
gagcgtgaacctcgcgccccgcgcccggcccgtgagccgcgcgctccccgtgaaccccgt
gccgaggtcgtggttgaggcggtagagacccaagctgctattgccgccgtcgatgccgaa
ccgcgccaggagaaagagcagaaggtggccgagcgccgcgaacgtcgtcagctgcgcaag
cagatccgcgtcgatatcgccgcaaccgactcccctgccctgccggttgacgagcaggca
ggcgatatcgccgtggtgcaagccgcaaccgtcgagcagcaggacgagcagggggaaggc
cagcgccgttcccgtcgcacgccccgcagccagcgaatcgaaggccagcgtcgcaagcgc
atcaacgaagatgcacgcggtcagcgtgacgacgagcctcagggcgaggtgcaactcacc
acagccgcccaggcggatgcggctcaggtcaaggtggaagagcccgccgtgcctgtcgtc
accattccgagcgcggaagccgtggctgcagcgctgcaagcctctgcagccctgaccgag
cacgtggttgccgaggccattgccgaagaagctgccgagcaggcacaagccgccttggcc
gtcaaacctgtcaccgagactgccgagcgggcggttgaaccggcagccgtagtcgcagta
gctgcggtcgaagaagaagcagctgacgtcgtgactgccgaccccgtagttgccgacgtg
gtggtccaggccgatgaggcccagcccagtgctgccgtcgttgccgaacccgtgatgaac
gaggtcgtcgccgaggtggaagcggcccccgccgttaccgccgagccggtggcccctgtt
gtagctgctgaagctgaagtcgtcacaacccccgaggctgtggtggcccagcctgcgccc
gttgccgtacctgcggccaagaccctgagcaagggtgccggcgtgctggcccgtgctcgc
atggcctctgctcccatggcaacaccggctgcagccccagcaccggcgcctcgcgcaccg
gttgagtacgaacctctggtgcgcagcgcagtgacgacctcgggtcgtcacggtggcagc
accgcggccagcaacgtggcaaccagcccggccggtcgcccctga
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