Athalassotoga saccharophila: ATHSA_0028
Help
Entry
ATHSA_0028 CDS
T06407
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
asac
Athalassotoga saccharophila
Pathway
asac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATHSA_0028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asac03019
]
ATHSA_0028
03009 Ribosome biogenesis [BR:
asac03009
]
ATHSA_0028
Enzymes [BR:
asac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATHSA_0028
Messenger RNA biogenesis [BR:
asac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATHSA_0028
Ribosome biogenesis [BR:
asac03009
]
Prokaryotic type
rRNA helicases
ATHSA_0028
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
CMS1
Cas3-like_C_2
Utp25_C
AAA_30
CwfJ_C_2
WHD_MCM3_C
Motif
Other DBs
NCBI-ProteinID:
BBJ27161
LinkDB
All DBs
Position
complement(28756..30117)
Genome browser
AA seq
453 aa
AA seq
DB search
MVKFSDLNLSENTLSALERIGVNTPTPIQSLAIPPTLKGKDVIGQAQTGTGKTFAYILPA
IENITGDGLQILVLCPTRELALQVTGEFKKFIDPRDVVTVYGGQEISYQIRAIKKSKVVV
GTPGRLIDHLRRKSIKLDSIKMVVIDEADEMLNMGFIDDVGTILEEVPPQRQTLLFSATM
PKPIIEITKKFQRDPILIKVPSKELTVSGIHQHYFSVKEKDKNELLFRILDIYNPQSAMI
FCNTKKTVDDLSSALKENNYLADAIHGDIKQFQRDKVMNAFKSKNVKILVATDVAARGLD
IKDVEIVINYDLPNYNEYYVHRIGRTGRMGKSGIAFTFVTSHEIYKLHEIERYAGKIEKL
EIPSIEDVENKSKTVLLNKIREELEGEGYKRYIENAKMLVEEFSEVEVVAALLKMNEKNF
RKREFKAIEKIRDRSDFEKRYVKKDRRVARRRN
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggttaaattttcagatttaaatttgtcggagaacactcttagcgcacttgagagaata
ggagtgaacacaccgacgccaatccagtcgttggcaataccgccaactttgaaggggaag
gacgtaataggtcaggcccagacgggaacaggaaagacctttgcttacatccttccggca
attgagaatataacgggagatggcttgcagatacttgttttgtgtcccacaagggaactt
gcacttcaggtaaccggcgagttcaaaaagttcatcgatcctcgagacgttgtcacagtc
tacggtggccaagagatttcttaccagataagggccattaaaaaaagcaaagtggtagtt
ggaactcccggaagacttatcgatcatcttcgcaggaaaagcataaaattggacagcatc
aaaatggttgtcatagatgaggccgatgaaatgcttaacatgggatttatagatgatgtt
ggaacaatcctcgaagaggttccacctcagagacagaccctgctcttttctgccacaatg
ccaaaacctataatcgagatcacaaagaaatttcaaagggatccgatccttataaaagtt
ccttcgaaagagttaactgttagcggcatccaccagcactactttagcgtgaaagaaaag
gataagaacgaattgctctttagaatactcgatatttacaatcctcaaagtgcgatgatc
ttttgcaacaccaaaaaaaccgtcgatgatctttcgtctgctttaaaagaaaacaattat
ctcgctgacgcaattcatggcgatataaaacaatttcaaagggacaaagtcatgaatgct
tttaaatctaaaaacgttaaaatacttgtggcaacggatgtagcggctcgtggtctcgat
ataaaggacgtcgagatcgttatcaattacgatcttccaaattacaacgagtattacgtc
cacagaatcggaagaaccggcagaatgggaaagagcgggattgctttcacattcgtcacc
tctcatgagatttacaaattacacgaaatagaaagatatgccggaaagatagaaaaactc
gaaataccatcgatagaagatgtcgaaaacaaaagcaagaccgtacttttaaacaagata
agagaagaacttgaaggagaaggatataaaagatatatagagaacgcaaagatgcttgtc
gaggagttttccgaagtagaagtcgtggcggcacttttgaagatgaatgagaagaatttt
agaaagcgcgaattcaaagcgatcgaaaagataagagacagaagtgatttcgaaaaaagg
tacgtaaaaaaagataggcgggtggcacgaagaagaaattga
DBGET
integrated database retrieval system
