Athalassotoga saccharophila: ATHSA_0930
Help
Entry
ATHSA_0930 CDS
T06407
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
asac
Athalassotoga saccharophila
Brite
KEGG Orthology (KO) [BR:
asac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asac03400
]
ATHSA_0930
DNA repair and recombination proteins [BR:
asac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ATHSA_0930
Archaeal homologous recombinant proteins
ATHSA_0930
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_15
AAA_27
AAA_21
AAA_29
Helical_needle
DUF4200
Bap31_Bap29_C
AAA_16
ABC_tran
YwqH-like
Motif
Other DBs
NCBI-ProteinID:
BBJ28030
LinkDB
All DBs
Position
complement(906007..908613)
Genome browser
AA seq
868 aa
AA seq
DB search
MIIRSVKLQNFKSHLDSSISFSEGLNLIIGPNGSGKSSILEAIGLAFFGITNEKKLSQFI
TNEDSKNTALIKVDFVSDGIHFTITKEISSSQSRVKISDDTGLTVDGNAKVIEKMKQLFR
IETDPEKIYKNVITSYQNQMTDIFAGRESERKNFFNALFDTEIYKKISSSHVKKYSDTLE
SNLNNLNNIASNLESEINERASLPDEIRSLEGEIKSKENEISAWKYQIEKLQKFLSDQIE
LKDRMNSMISQRKILESKLEGLNHELVNLNKSKSESENAGQVLILYRNDYVLYEEIYLKV
QEENEKISRMRNALDEIQKVNKEISDKRLEIEKFSVSIASDKDRLKENDWNRQIYIDQLK
SSQDRVRELTIQLEEQERVLKDLELEKKKFKEEMNTSLNLDVKELEDRLSEIRDKIAITN
SKIKDLKSAKETLGNGICPYLKERCLNINGDPDRFFNPQIENSQSELLQFQKEKADIEEQ
INKIERYHEEIMNSIKVHLEEIEIKLRKIYEENAAKRSLINSEMQNQERIKKALEDLENS
SQNLRSLIEKRDQKISELRSELEVLLQKTSNEEKIKLEIETLMKEYDSHREVLKKVKKGH
DLYVENQKSAAIINEIISKIEERKSEIESIQSGIDQINSDLSKVKVLYDEEELKKTRETI
ENITSNMNSANMELGELRSDLKHKLDESHEIEKKRAKLEDVRSSIKSIKVKLEMAKNLRA
LLDQMGSQVSTIYRENISFKAMANHNLLTKRSETVLWDENYDLHLISKNGKLTSDRTFGM
LSGGEQVALALAMRMAMATFFSRSGFAIFDEPTVNLDLERKNALSETLPDLIGEMDQVIV
VTHDDTFREMTEKIISLKNIDGITTIVN
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgataataaggtcggtgaaacttcaaaatttcaaaagtcatctcgattcttccatctct
ttttcagaaggtcttaatttgataataggtccaaatggttcgggaaaatcaagtattttg
gaggccataggacttgctttttttggaataaccaacgaaaaaaaactttcccaattcata
acgaatgaagattctaaaaatacggcattgataaaggttgatttcgtatcggatggaata
catttcaccatcacaaaggagatctcgtcatcacagtcaagggttaaaatttcagacgac
accggattaacggtagatggaaatgcaaaggttatcgagaagatgaaacaactcttcagg
atagagacagatcccgagaaaatatacaaaaatgtcataacatcttatcagaatcaaatg
acggatatatttgccggcagagaaagcgaaaggaaaaatttcttcaatgcactctttgat
accgagatatacaaaaagatctcttcgagtcatgtcaaaaaatactccgacacacttgag
tcgaatttgaataatctcaacaatatcgccagtaatttggaatcggagataaatgaaagg
gcatctctgccagatgagataagatcgcttgagggagaaataaagtctaaagaaaatgaa
atctctgcgtggaaatatcaaatagagaaacttcaaaaattcttatcagatcagatcgaa
cttaaagatagaatgaactctatgatatctcaaagaaagatattggaaagcaaacttgaa
gggttaaatcacgaacttgtgaatttgaataagtcaaaatcagagtcagaaaatgccgga
caggttctcatcctttacagaaatgattatgtcctttacgaagagatataccttaaggtc
caagaagagaatgaaaagatttcacgcatgagaaatgccctcgatgagattcagaaggta
aataaagaaatttctgacaaaaggttagagatcgaaaagttttctgtctcaattgcttcg
gacaaagatagattgaaagagaatgattggaatcgccagatctacatcgatcaattaaag
tcatctcaagatcgggtaagggaattaacgattcaattggaagaacaagaaagggtccta
aaggaccttgaattagaaaagaaaaaattcaaagaggaaatgaacacatctttgaattta
gacgttaaagaattggaagatcgtctaagtgagataagagacaaaatagccatcacgaat
tcaaagataaaggatctgaaaagcgcaaaagaaactctcggaaatggaatatgcccctac
ctcaaagaaagatgtcttaacataaatggagatccggacaggttcttcaacccacagatc
gaaaattcacaatcagaacttttacaatttcaaaaggaaaaggcagatatagaggaacaa
ataaacaagatcgaaagataccacgaggagatcatgaattcgataaaggtccacctcgag
gagatagagataaaacttagaaaaatatacgaagaaaatgcggcaaaaaggtctcttata
aattcagaaatgcaaaaccaagaaaggataaaaaaagcccttgaagatcttgaaaattca
tcccaaaatctaagaagccttatcgaaaagagagatcaaaaaatctcggaactgagatct
gaattagaagtgcttttacaaaaaacttcaaacgaagaaaagataaaattggagattgaa
actcttatgaaagagtacgattctcatcgggaagtgctcaaaaaagttaaaaaagggcat
gatctctacgttgaaaaccaaaagtctgccgcgatcatcaacgagatcatttcaaaaata
gaggaaagaaaatcggagatcgaatctatccaaagtggtatcgatcaaatcaactccgat
ttgtcaaaggtcaaagttctctacgatgaggaagaattgaaaaagactcgagagacaatt
gaaaatatcacatccaacatgaattcggcaaatatggaactcggagagttaagatctgat
ctaaagcacaaattagatgaatctcacgagatcgagaagaaacgcgcgaagttagaagat
gtgagatcatccatcaaaagtataaaggtaaagttggaaatggcaaagaacctaagggct
cttctcgatcagatgggatctcaggtgtcgacaatttacagggaaaatatatcattcaaa
gcgatggccaatcacaaccttcttaccaaaagatctgagacggtactttgggacgaaaat
tacgatctacacttgatatccaaaaatggaaagttaacatcggacagaacctttggcatg
ctctcgggcggcgaacaggttgccctcgccctcgcgatgaggatggccatggccaccttc
ttttcgagatctggctttgccatcttcgatgaaccaactgtgaatctcgatttggaaaga
aaaaatgcgctttccgaaaccttgcccgatcttatcggggaaatggatcaagtcatagtc
gtaacgcatgatgacacttttagagagatgacagaaaagataatatctcttaaaaatatc
gatgggataacaaccatcgtcaattaa
DBGET
integrated database retrieval system
