Alosa sapidissima (American shad): 121677627
Help
Entry
121677627 CDS
T11137
Symbol
polrmt
Name
(RefSeq) DNA-directed RNA polymerase, mitochondrial isoform X1
KO
K10908
DNA-directed RNA polymerase, mitochondrial [EC:
2.7.7.6
]
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
asad03029
]
121677627 (polrmt)
Enzymes [BR:
asad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121677627 (polrmt)
Mitochondrial biogenesis [BR:
asad03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Mitochondrial RNA polymerase
121677627 (polrmt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol
RPOL_N
PPR_3
PPR_2
Motif
Other DBs
NCBI-GeneID:
121677627
NCBI-ProteinID:
XP_041912417
LinkDB
All DBs
Position
12:15744239..15829091
Genome browser
AA seq
1288 aa
AA seq
DB search
MSLLRLCAFPKCLTSGMVVNKAARQVLNANHCRSCFRIQNNFEKTITDTTLVCRRRYSVL
IPKKEEGKTRMRQQHQLLDVLEARIQQLQSDVILDVSNVHFLKVPQTGRGTASAKGPKNV
SGERGEMPKAGQPRNTETGGSSSPKTHNSRWMEKLKNEKWNKTRKQARLQLKLQEKMKKE
NKGSLMLPGTSKKTISTTKKSKVTQKQEQAKTKKQKSPRPAVAVQETYSREAELPEVEEL
DQQVNQWVSANAEKLLEDNEGNRYGDAQLSVRCFLEACVFIGDVDRAQRCLNNHHRNLTK
RKLLSMSAYNIMLRVWAKRGSISQIGRIFTLIEEAGLKPNLSSYSAALECMGRHPETSPH
VIDRCLQQIKQDGLSVDDLFRQTVFRQDERDMVLSAVHVVWPDYQPSGLSDQQICPSPLV
QEFYREREDSRYPKLAFSTEDLRQRFSQQLDMERASTVTIDSVEALKPVTPHMVKMRELL
ASQRERWAKALLQVFRESKMVMAHSHQKSGKISLYLYLCILEDKEYVDAMLQCLTNLPPS
GESLLFIAKELGNRVYNKFCIRQKAQSQMVDKLARVYSSYTSLLAQDTPTSNVLPRERWE
ELEAELSAGPSLLCDDTPWPNVLVIQLGTFLVDLMVRELKVHSDLIVPGPDRKLIAVLYH
MYTFRSNRQIGFIKPHPILTQLQSEALETRLTFDSYVMPMLCPPVPWTSPRFGAYLLTPT
KLMRSVEGAVQHQLRLEKCPDYELHSVLDSLNQLGNCAWRINQPVLDIIIGIFNDRGNEK
LDVPPPVSEAPEIPRFSHSDPSYTTAEKAALKREAIRAKKKFAEMHSLRMDALYKLSIAN
HMRDQVFWFPHNMDFRGRTYPCPPYFNHLGSDVTRALLVFAEGKPLGAHGLDWVKIHLVN
LTGLKKRSSLAGRLAYANSIMDDILDSADHPLTGRKWWMNADEPWQCLACCMEIANATRS
PDHTKYISHFPVHQDGSCNGLQHYAALGRDVIGATSVNLMPCDEPQDVYSGVAQQVEEFR
AQDAEKGIRIAQVLEGFINRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIDDFPKEHVWD
ASYYLVHQVFSSLKEMFTGTREIQDWLTESARLIAKSGSTVEWVTPLGLPIVQPYHRIRN
QMLKSNIQFLSLQISHDASQKPDTVKQKNAFPPNFIHSLDSTHMMLTALYCYSAGLTFVS
VHDCFWTHAATVDTMNQVCREQFVALHSQPILEDLSKFLLEKYCSEHPGERKNKKLMEYW
RMIHLLGKVPQTGDFNLEHVKESTYFFS
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atgtcactcttgagactatgtgcctttccaaagtgtctaacaagcggcatggtcgttaat
aaagctgcgcgtcaagtgctcaatgccaaccactgtcgctcctgtttcagaattcagaat
aactttgaaaaaacaatcacagacaccactttggtttgtcgacggcgctattccgttctg
attccgaagaaagaagaagggaagactcgtatgaggcagcagcatcagcttttggatgtt
cttgaagccaggattcagcagctacaatctgatgtcattttagatgtctcaaatgtacat
tttctcaaagtaccacagactggtaggggcactgcgtcagctaagggcccaaagaatgtg
tctggagaaagaggtgagatgcccaaagcaggccagcccaggaacacagagacaggaggc
tcctcctcaccgaaaacacacaacagccgctggatggagaagctgaaaaatgaaaagtgg
aataaaacgagaaaacaggcgcgcctccagctgaagcttcaggaaaagatgaagaaggag
aataaaggcagcctgatgctgccaggcacctcaaaaaagacaatctcaaccaccaaaaag
agcaaggtcacgcaaaaacaggaacaagctaagactaagaagcaaaagtctcccagacct
gctgttgctgtccaggagacgtactctagggaggctgaactacctgaagtggaggagctg
gatcagcaggtgaaccagtgggtctctgccaatgcagagaagcttctagaagacaatgag
gggaatcgctatggggatgcacagctcagtgtgcgttgcttcctagaggcgtgtgtgttc
atcggcgacgtagaccgcgctcaacgctgcttgaacaaccatcaccggaacctcaccaag
cgcaagcttctgtccatgagtgcctacaacatcatgctgagagtctgggctaaaagaggt
tctattagccagattgggcgcatttttaccctgatagaggaagctggtctcaagcctaac
ctcagctcctactcagctgctctggagtgcatgggccgccacccagaaacttccccacat
gtcatcgacaggtgcctgcagcagatcaagcaggacggcctgagcgttgacgacctcttc
aggcagacggtcttccggcaggacgagagagacatggtgctgagcgccgtccacgtcgtc
tggcctgactatcagcccagcggcctctcagaccagcagatctgcccctcgccgctcgtc
caggagttctacagagagagggaggactcccgataccctaagctggccttcagcacggag
gacctgaggcagcgcttcagccagcagctggacatggagcgggccagcactgtcaccatc
gactccgtggaggccctcaagcctgtcacaccacacatggtcaagatgagggagctgttg
gcatcacagcgggagcgctgggcaaaggctctccttcaggtcttcagggagagcaagatg
gtgatggcccacagtcaccagaagagtggcaagattagcctctacctttacctctgcatc
ctggaggacaaggagtacgtggatgccatgcttcagtgtctgaccaacctgccacccagt
ggggagtccctgttgttcattgccaaggagcttggaaaccgagtctacaataagttctgc
atccgtcagaaggcacagagtcagatggtggacaagctggctcgggtttatagttcatac
actagcctactagcccaagacacgccgaccagcaacgtgttgccccgggagcggtgggag
gagctggaggcggagctgagcgcaggcccctccctgctgtgcgatgacacaccgtggccc
aacgtgctggtcatccagctgggcacgttcctggtggacctgatggtgcgggagctgaag
gtgcacagtgacctcattgttcccggccccgacaggaagctcatcgccgtgctctatcac
atgtacaccttccgcagcaaccggcagatcggttttataaagcctcacccgatcctgacg
cagctgcagtcggaggccttggagaccagactgacgttcgactcatacgtgatgcccatg
ctgtgtccgccggtgccgtggacgtcgccgcggttcggggcgtacctgctgacccccacc
aaactgatgcggtcagtggagggcgcggtgcagcaccagctgcgcctggagaagtgccct
gactacgagctgcactcggtgctcgactcgctcaaccagctgggcaactgcgcctggcgc
atcaaccagccagtgctggacatcatcatcggcatcttcaacgatcgcggcaacgagaag
ctggacgtgccgccgcccgtgtccgaggcgcccgagatcccgcgcttctcgcacagcgac
ccgagctacaccacggcggagaaggctgcgctgaaacgtgaggccatccgcgccaagaag
aagtttgccgagatgcacagcctgcgcatggacgccctctacaaactgtccatcgccaac
cacatgcgcgaccaggtcttctggttcccgcacaacatggatttccgcgggcgcacatac
ccatgtccgccctacttcaaccacctgggcagcgacgtgacgcgcgccctcttggtgttc
gctgagggcaagccgctgggggcgcacggcctggactgggtcaagattcacctggtcaac
ctgacgggcctgaagaagcgcagctcgctggctgggcgcctggcctatgccaacagcatc
atggatgacatactagactccgccgaccacccactcacggggaggaagtggtggatgaac
gcagacgagccctggcagtgtctggcctgctgtatggagatcgccaacgctacccggtca
cctgaccacaccaagtacatctcccacttccctgtacatcaggacggctcctgtaatggg
ctccagcactatgcagccctgggccgcgacgtgatcggtgccacgtccgtcaacctcatg
ccctgtgacgagccccaggacgtctacagcggagtggcccagcaggtggaggagttccgt
gcgcaggacgcagagaagggcattaggatcgcccaggtgctggagggcttcatcaaccgc
aaggtggtcaagcagacggtgatgaccgtggtgtacggggtcacacgctacgggggtcgc
ctgcagattgagaagaggctgaaggagattgatgatttccccaaggagcacgtatgggat
gcctcatactacctggtgcatcaggtgttcagcagtttgaaggaaatgttcacaggcact
cgggagatccaggactggcttactgagagcgcccggctgatcgccaagtccggcagcacg
gtggagtgggtgacccctctgggcttgcccatcgtgcagccgtaccaccgcataaggaac
cagatgctgaaaagcaacatccagttcctgagcctgcagattagccatgatgctagccag
aagccagacacggtgaagcagaagaacgccttccctcccaacttcatccactcgctggac
tccacccacatgatgctgacggccctctactgctacagtgccggcctcacttttgtctcc
gtccacgactgcttctggacacacgcggctactgtcgacaccatgaaccaggtttgcagg
gagcagtttgtggccttgcacagccagccgatcctggaggacctgtccaagttcctgctg
gagaagtactgctctgagcatccgggcgaacggaagaacaagaagcttatggagtactgg
aggatgattcacctcctgggcaaagtgcctcagacaggtgatttcaatctggagcatgtg
aaggagtccacatacttctttagctga
DBGET
integrated database retrieval system
