Alosa sapidissima (American shad): 121677797
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Entry
121677797 CDS
T11137
Symbol
rorca
Name
(RefSeq) RAR-related orphan receptor C a
KO
K08533
RAR-related orphan receptor beta
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121677797 (rorca)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
asad03310
]
121677797 (rorca)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121677797 (rorca)
Nuclear receptors [BR:
asad03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
121677797 (rorca)
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Bystin
Motif
Other DBs
NCBI-GeneID:
121677797
NCBI-ProteinID:
XP_041912736
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Position
12:complement(30483464..30495618)
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AA seq
517 aa
AA seq
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MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRNCQIDRTNRN
RCQHCRLQKCLNLGMSRDAVKFGRMSKKQRDSLYAEVQKHQQSQERSSMAANGNLNMGSR
GPADDGGIGDGVGLSSSHTTRTYSRGSSAALSDLDDITDLPDNLLFDLPLTPEGGATGGG
SYGSLELLGGGGSGGSSSHSSSQSSPEQSGQEYSDGGSSGGGGGGRGGSNNSNNSHIKQE
QYQLLHNSNMFTHSLLNDSSDGCSMMEIDRITQNVVKSHMETSQYSAEELKKLAWNTYTA
EETRCFQSKPVEVMWQQCAIHVTNAIKYVVEFAKRITGFMDLCQNDQIILLKAGCLDVLL
IRMCRAYNPVHNTLLFDSKFAGPQLFKTLGCDDLVNAVYELAKGFNRLQLSDEEMALFSA
AVLLSPDRLWLTDTQQVQKLQEKVYQALQHSLHRSGASEEKLSKMVSKLPMMKSICNLHI
DKLEFFRLLHPDTAYSFPPLYREVFCSEINFPDSTEG
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgagagctcaaattgaagtgatcccttgcaaaatatgcggggacaagtcgtctggcatc
cactatggagtcatcacctgcgaaggctgcaaaggtttctttcggcgcagtcaacagaat
aacgcaatgtactcatgctcacgacagaggaattgccagatagaccgcacaaaccgcaac
cgctgccagcactgccgcctgcagaagtgcttgaatctgggcatgagccgcgacgcggtc
aagttcggccgcatgtccaagaagcagcgggacagtctgtatgccgaggtgcagaagcac
cagcagtcccaggagcgcagctccatggccgccaacggcaacctgaacatgggctcccgg
gggccggcggacgacggcgggatcggagacggcgtgggcctcagcagcagtcacaccacg
cgcacctacagccgcggctctagcgccgcgctcagcgacctggacgacatcaccgacctg
cccgacaacctgctcttcgaccttcccctcacgccagagggcggagcgaccggtgggggc
agctacggcagcctggagctgctcggcggtgggggcagtgggggcagtagctctcacagc
tcttcacagagctcgcccgagcagagcggtcaagagtatagtgacgggggcagttctgga
ggaggaggaggaggaagaggaggcagcaacaacagcaacaactcacacatcaagcaggag
caataccagctgctgcacaactccaacatgttcacacactcgctgctcaacgactcgtct
gatggctgctccatgatggaaatagatcgcatcacccaaaacgtggtgaagtcccacatg
gagaccagtcagtacagcgcagaggagctgaagaagctcgcgtggaacacctacactgca
gaggagacacgctgcttccagagcaagcccgtggaagtgatgtggcagcagtgcgccatt
cacgtcaccaacgccatcaagtacgtggtggagttcgccaagcgcatcactggattcatg
gacctctgccagaacgaccagatcattcttctgaaagcaggctgcctggatgttcttctg
attcgtatgtgccgggcctacaaccctgtccacaacacactgctcttcgacagcaagttt
gccggcccccaactcttcaaaactttaggctgtgatgaccttgtgaacgccgtctatgaa
ctggccaagggcttcaaccgcctacagctcagcgatgaggagatggcgctgttcagcgct
gccgtgctcctatccccagaccggttgtggctgacagacacgcagcaggtgcagaagctt
caggagaaagtgtaccaggcactgcagcacagtctgcacaggagtggagcttcagaggag
aaactgtcaaagatggtgtccaagttgcccatgatgaagtccatctgcaacctccacatc
gacaagctggagttcttccgcctgcttcacccggacacagcctatagcttcccacccctc
taccgggaggtcttctgcagcgaaattaacttccctgactccacagagggctag
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