Alosa sapidissima (American shad): 121677847
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Entry
121677847 CDS
T11137
Symbol
pdgfra
Name
(RefSeq) LOW QUALITY PROTEIN: platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04010
MAPK signaling pathway
asad04020
Calcium signaling pathway
asad04144
Endocytosis
asad04510
Focal adhesion
asad04540
Gap junction
asad04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121677847 (pdgfra)
04020 Calcium signaling pathway
121677847 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121677847 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
121677847 (pdgfra)
04540 Gap junction
121677847 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
121677847 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
asad01001
]
121677847 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
asad04090
]
121677847 (pdgfra)
Enzymes [BR:
asad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
121677847 (pdgfra)
Protein kinases [BR:
asad01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
121677847 (pdgfra)
CD molecules [BR:
asad04090
]
Proteins
121677847 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
V-set
VEGFR-1-like_Ig-like
VEGFR1-3_N_Ig-like
Kinase-like
Haspin_kinase
Motif
Other DBs
NCBI-GeneID:
121677847
NCBI-ProteinID:
XP_041912840
LinkDB
All DBs
Position
12:14483386..14510582
Genome browser
AA seq
1506 aa
AA seq
DB search
MQLGVFFNQRAQSKGVSKAGHSNVTMGGFETHLTLLAVLISVLPARSDPPVIVSNEDEFV
VDLHSRFNISCIGKKEVVWADPLPENVFYYPGFFTATLLIGDAEASHTGYYTCVYASKNG
ESGRHEDPEENESEIYIFVPDPDVPFAPEENTEVETDPISNIIPCRVTDPQSHVILKSLS
SNIELQGFYDNKNGFLGNFSAGNYVCETVVNDETKRSAIYTVIERKRLPAESVVKQDFQV
TLKASEEGVMAGDAFNLTCIAPRGSEYLQHWIHPLKQQAADAIPMKETLPDKVLYILSIP
SASAHDGGTYECYVTDRLKGQTRSSTVAVSVYEEKPFVSLDHSGIGGVEVITLLEDTEFT
IFIDAYPEPKILWKKDGIPLEKSTFLYAVNSHVLGNRYQSVLNLKHPTEKDSGKYTFNAT
SGPHYAHFSFELRVKAPSAVLFPSSQAPVLLPQSDELVVALGSSFRLTCRGMAELVWNAP
TYLREETLDDKGGLFISTVTVENAGVTNTGDYFCAYKGANQTEGEGSAIYIYVPDPEVPF
VPSMDPSYIHVMTDHEEMEIPCRVSDPTANVSLVNVEKQQELPAEYDSKRGFXGFFNAGT
YVCRALVNGQEHLSEEYIVHGWAGGSDLNVELLAKRTALLVGETLTVNCVARGSEMLEDH
WKYPGKLYGRGEKTVRENRREMTINYTLRVSDVSLKDSGVYACSITDIMSNESQTKELTV
TVYESPFVSLVPDFTHTEQAELDEVREFKVDIDAFPAXNVVWHKDGVPLGGNSAEMTTNL
YTISETKYQSALTLIRAKAEDSGNYTVRAETRNQSSSFSFSLQVKVPAVIVEMMDLHHGS
ATGQSVVCIAEGEPLPEVEWLICKNIKHCANDSTQWSPLPANSTEITVDTHINQDVQLES
QVIFGHLENTLAVRCLAKNGMATVAREVKLVTSGPHSELTVAAAVLVLLVIVIISLIVLV
IIWKQKPRYEIRWRVIESVSPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRILGSGAFGK
VVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTK
SGPIYIITEYCFYGDLVNYLHKNRDSFLSHHPEKGKKELDIFGINPADETSRSYVILSFE
GKGDYMDMKQADTTQYVPMLEMNQASKYSHLQGSDYDHPPSQKNEGEGESLLSDDSNEGL
TTMDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLSQGKIVKICDFGLARDIMHDNNYV
SKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMVVDSSFYNKIK
SGYRMAKPEHATEVVYEMMSKCWNSEPEKRPSFLSLSETVASLLPAGYKRSYERMNHDFL
KSDHPAVTRVQRMGGSIIGIDDDDNYIGVTYKNQGKLKDRESGFDEQRLSSDSGYIIPLP
DLDPMSDEEYGKRNRHSSQTSEESAIETGSSSSTLAKRMEGETLEDITLLDEMCLDSSDL
VEDSFL
NT seq
4521 nt
NT seq
+upstream
nt +downstream
nt
atgcaattaggagttttttttaatcaaagggcacaatcaaaaggagtttcaaaagcaggc
cacagcaacgtgaccatggggggtttcgagacccatctcactcttttggctgtgttaatc
agtgtattaccagcccggagtgatccaccggtcatagtttcaaacgaagatgagtttgtt
gtcgatctgcactcacggttcaacatcagctgtatcgggaagaaggaggtagtatgggcc
gaccccctgcccgaaaacgttttctattatcctgggttcttcactgcaacacttctgatt
ggtgacgctgaagcctcccatactggatactacacatgtgtttacgcatccaaaaatggc
gaatctggaaggcacgaggacccagaggagaacgaatctgaaatatacatatttgtgcca
gatcccgatgttcccttcgcacctgaggagaacactgaagtggagactgacccaattagc
aatatcattccttgtcgcgtcaccgacccccagtcccatgtcattctcaaaagcttgtca
agtaatatcgaactgcagggcttctatgacaacaagaatggctttcttggcaacttttct
gctggaaattacgtatgtgagaccgttgtcaacgacgagacgaagagaagtgcaatctac
actgtgattgaaaggaaacgacttcctgcagagtctgtggtgaagcaggacttccaggtg
acactgaaagccagcgaggagggggtgatggcaggggacgccttcaacctcacttgcatc
gctccgcgggggtctgagtacctgcagcattggatccatcccctaaaacagcaggctgcg
gatgctattccgatgaaggagactcttcctgataaggtgctgtacatcctcagcatcccc
tcggcctctgcccacgacggcggcacctatgagtgctacgtcaccgaccggctcaaggga
cagacccggagcagcacagtggccgtctccgtctatgaggaaaagccttttgtgtcgctg
gaccacagtggcattggtggcgtggaggttatcaccctgctggaggacactgagttcacc
atctttatcgatgcctacccagagcccaagatactgtggaagaaagatggcatccctctg
gaaaagagcacttttctctacgctgtcaacagccatgtcctcggaaaccggtatcagagc
gttttaaatctgaaacacccaaccgagaaggacagtgggaagtacaccttcaacgccacc
agtggtccacactacgcgcacttctcttttgaactccgagtcaaagctcccagtgctgtg
ctgttcccgtcgtcccaggccccagtgctgctgccccagagtgatgagctggtggtggca
cttggctcctcgttccggctcacctgccggggcatggccgagctggtgtggaacgccccc
acctacctgcgcgaggagacgctggacgacaagggcggcctgttcatcagcacggtgacg
gtggagaacgccggcgtgaccaacactggggactacttctgcgcctacaagggagccaac
cagacggagggcgagggcagcgccatttacatctacgtgcctgatccagaggtgccgttc
gtcccctccatggacccgtcttacatccacgtgatgacggaccacgaggagatggagatc
ccgtgccgcgtgtctgaccccaccgccaacgtctctctggtgaacgtggagaagcagcag
gagctgcccgccgagtacgacagcaagagaggcttcntcggtttcttcaatgccggcact
tacgtctgcagagcgctcgtcaacgggcaggaacacctcagcgaagagtacatcgtccac
ggatgggcaggaggctctgatctaaatgtagagcttcttgctaagagaactgctctcttg
gtgggagagacgctcacagtcaattgtgtagccagaggcagtgagatgctggaggaccac
tggaagtaccctggcaaactgtatggtcgtggtgagaagaccgtgagggagaacagacga
gagatgaccatcaactacaccctgcgggtgtccgatgtgtcgctgaaggacagtggcgtc
tacgcctgctccatcaccgacatcatgagcaacgagagccaaaccaaggagctgaccgtc
accgtttatgagagcccctttgtctcgctggtccctgacttcactcacacggagcaggcc
gagctggacgaggtgcgggagttcaaggtcgacatcgacgccttccccgcgntcaacgtt
gtctggcacaaagatggagttcctctcggcggcaactctgcggagatgaccacaaacctc
tatacgatcagcgagacgaaataccagagcgctctgaccctgatccgtgcgaaggctgag
gacagcggcaactacacggtcagggccgagacccggaaccagagcagcagcttcagcttc
tccctgcaggtcaaagtccctgcagtcatcgtggagatgatggatctccaccacggctcc
gccacgggtcagtcagtcgtgtgcatcgctgagggggagcccttgccagaagtggagtgg
ctcatctgtaagaacatcaaacactgtgccaatgactccacccagtggagcccgctacct
gccaactccactgagatcaccgtggacacgcacatcaaccaggacgtgcagctggagagc
caggtgatcttcggccatctggagaacacgctggccgtccggtgcctggccaagaacggc
atggccaccgtggcccgagaggtcaagctggtgaccagcggtcctcactcggagctgact
gtggcagctgctgtgctggtgttgctggtcattgtcatcatctcactcattgtgctggtc
attatctggaaacagaagccacgctatgagatccggtggcgggtgattgagtcggtcagt
ccggacggtcacgagtacatctacgtggaccccatgcagcttccctatgactcccgctgg
gagttccctcgcgatggcttggttctgggtcgtattctgggctcgggggcctttgggaag
gtggtcgagggcacggcctacgggctcagtcgctcccagcctgtcatgaaggtggctgta
aagatgctgaaaccgacggctcgttccagtgagaaacaggcgctcatgtctgagctgaag
atcatgacccacctgggcccgcacctcaacattgtcaacctgctcggagcctgcaccaag
tcagggcccatctacatcatcactgagtactgtttctatggcgacctggtcaactacctg
cacaagaaccgcgacagcttcctgagtcaccacccagagaagggcaagaaagagctggac
atcttcggcatcaaccccgccgacgagaccagcagaagctatgtgatcctgtcgttcgag
ggtaaaggggactacatggacatgaagcaggcggacaccacccagtacgtgcccatgttg
gagatgaaccaggcctccaagtactcacacctgcagggctccgactacgaccacccgccc
tctcaaaaaaatgaaggtgagggagagagtctgctctccgatgacagcaacgagggcctc
accaccatggacctcctcagcttcacctaccaggtggcccggggcatggagttcctggcc
tccaagaattgtgtgcatcgggacctggccgccagaaatgtcttgctctcccaaggaaag
atagtcaagatctgtgactttggcctggccagagacatcatgcatgacaacaactatgtc
tccaaaggaagcacattcctgcctgtcaagtggatggctccagagagcatctttgacaac
ctgtacacaaccctcagtgacgtctggtcctacggcatcctgctgtgggagatcttctct
ctcggaggaactccttacccaggcatggtggtcgactcaagcttctacaacaaaatcaag
agtggctacagaatggccaagcctgagcatgcaactgaagtcgtctatgagatgatgtcg
aagtgctggaacagcgagccagagaagaggccttccttcctgagcctgagtgagactgtg
gcatcgctactgcctgcaggatacaagaggagctacgagcgaatgaaccatgacttcctg
aaaagcgatcacccggctgtgacccgtgtgcagcgcatgggcggcagcatcattggcatc
gacgacgatgacaactacatcggagtcacctacaagaaccagggcaagctgaaggaccgc
gagagtggcttcgacgagcagcgcctcagctcggacagcggctacatcattcctctgccc
gacctggacccgatgtccgatgaggagtacggcaagaggaaccgccacagctcacagacg
tctgaggagagtgccatcgagaccggctccagcagctccaccctggccaagcggatggag
ggcgagactctggaggacatcaccctgctggacgagatgtgcctagactccagcgacctg
gtggaggacagcttcctgtga
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integrated database retrieval system
