Alosa sapidissima (American shad): 121678139
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Entry
121678139 CDS
T11137
Symbol
si:ch73-63e15.2
Name
(RefSeq) protein strawberry notch homolog 2 isoform X1
KO
K26273
protein strawberry notch
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
asad03036
]
121678139 (si:ch73-63e15.2)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121678139 (si:ch73-63e15.2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
121678139
NCBI-ProteinID:
XP_041913313
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All DBs
Position
12:complement(25719101..25776943)
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AA seq
1442 aa
AA seq
DB search
MPSLSSQHPAMDTENHLHPEEPQLDMGMYGLTTPTLGGQSYSRGPPWAYSQQGFMDLQRP
MQPYSQPYHLNSTSMEMLGVSTFPDMDFPNITLQPSEVFSQDLSCLDDLSSTSLFSSPAD
SLSEYTDAQVFLNSDNLSHVPTIWDINTPAQNQPEPNSNRFQGLNSFEDLSAIISTPAGA
LQPQRPHTPPENEQEADEEETEELGHVDTYADYKPSKSTIGISHPDRVVETNTLSSVPPP
DITYTLSIPDDTIDSGLLSALQLEAIIYACQQHEVILQNQQRAGFLIGDGAGVGKGRTVA
GIILENYRKGRKRALWFSVSNDLKYDAERDLKDINAPNIPVHALNKIKYGDTATSEGVLF
ATYSALIGESQAGGQHRTRLKQILDWCQPDFEGVIVFDECHKAKNATSTKMGKAVLDLQN
KLPRARVVYASATGASEPKNMIYMSRLGIWGDGTPFRTFDDFLHAIEKRGVGAMEIVAMD
MKVSGMYIARQLSFSGVSFRIEEIGLDEDFKLVYNKAAKLWAEALNVFTQAADLLGLVSR
KSLWGQFWSSHQRFFKYLCIAAKVRRLVELAKKELDAGKCVVIGLQSTGEARTREVLDEN
DGHLDRFVSAAEGVFQSLVQKHFPSEKQRREKGAGNKRKRKPRGRQPKCSRQAQEFAGVI
SISDDSSSDTEAMDSDSNSSPDSLQDNNDDVIFVHQTNSHTAEIEKMKQSLLTKISELGK
ELPLNTLDELIDKFGGPEKVSEMTGRKGRVVRRTDGTVAYESRAEQSYTIDQINIKEKDR
FMSGEKLVAIISEAASSGISLQADKRVKNQCRRVHMTLELPWSADRAIQQFGRTHRSNQI
TAPEYIFLISELAGERRFASIVAKRLESLGALTHGDRRATESRDLSKYNFENKYGTKALD
KITKAILGYIESKVPPPKDYPGGDSMFFSDMKQGMINVGIFSRDSRFGLSTEKDCTITKF
LNRILGLEVHKQNSLFQYFTDNFDYLIEKDKKEGKYDMGILDLAPGNDEIYEEKQEEFLT
VGNPHDGQVVLYKITVDRGMPWEEALAKSQSLSGPDVGFYLSHKLRGTQPCVLLAEQGRG
HNLIIHKPNIGKQAQPESLDNMGKRYRKVTPEEAKDIWEKQYQFSFSKCSHANWNGKCKK
VEEGQECIQGMRLRQYHMLCGALLRVWKRVADTVADLTGSSILQIVRLKTKQLQKQVGIK
IPESCVLRVRDELQQMDSEVRRRRERELLQAQEFQRPPALHTDALGPLPFPSTTGELSGL
SPFLYPPPTVGAFPSLSKTPLADMLDGPDTVALGLGALPATAADFGLESLESRQQPQPPQ
QQQEKDKFLEFMDSIRQFDLTPLSNTPPPTPASSSPAAMSCVPAGTAQAPGGLFASQAVS
TVATSTSSSPMFSEMPLLTMPTTPCNSDVHIDFREVLNTMFQNSTLDRQSVIKFPLQGRD
SS
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgccctccctgtcctcccagcatccggctatggacacggagaaccacctgcacccagag
gaaccgcagctggacatgggcatgtacggccttaccacccccaccctcgggggccagtca
tattcccgtggacctccctgggcgtactcccagcagggcttcatggacctgcaacggccc
atgcagccctatagccagccataccacttgaatagcacatccatggaaatgttgggtgtt
tccacattccctgacatggacttccctaacatcacgcttcagcccagtgaagtcttctct
caagacctctcttgcctagatgacctgtcctccacctctctgttctcctctccagcggac
tcactgtctgagtacactgatgctcaggtcttcctcaactcagacaacttgtcgcatgtg
cctacaatatgggatatcaacaccccagcacagaaccagccagagcccaactccaacagg
tttcagggtctgaacagtttcgaggacctgtcggccatcatcagtacaccagcgggagct
ctccagcctcagaggcctcacacaccacctgagaatgagcaggaggcagatgaggaggaa
acggaggaactgggccatgtggacacctacgcagactacaaaccctccaaatccaccata
gggatctcccatccagaccgggtggtggagaccaacacactgtccagtgtgcctccccct
gacatcacctacaccctctccatccctgacgacaccattgacagtggcctgctctctgcc
ctgcaactggaggccatcatctacgcctgccagcaacacgaggtgattctgcagaaccag
cagcgagcgggcttcctgatcggagacggggccggcgtgggcaagggccgcactgtagcc
gggatcatcctggaaaactaccgaaagggacggaagagagcgctgtggttcagtgtttcc
aacgacctgaaatatgacgcagagagagatctcaaagacattaacgcacccaatatcccc
gtgcatgccttaaataagataaagtatggggacacagctacctcagagggcgtcctgttt
gccacgtactccgcgctgattggagagagccaggctggtgggcagcatcgcactcgactc
aagcagatcctggactggtgccaaccggactttgagggagtcattgtgtttgatgaatgc
cacaaggcgaagaatgccacatccaccaagatgggcaaggctgtcctggacctgcagaac
aagctgccccgggccagggtggtttacgccagcgccacaggtgcctctgagccaaagaac
atgatctacatgagtcggttgggcatctggggagatgggaccccgtttcggacatttgat
gacttccttcacgccatcgaaaagaggggcgtgggcgccatggagattgttgccatggac
atgaaggtcagcggaatgtacattgcacggcagctcagcttctctggagtgtcattccgc
atcgaggagattggcctggacgaggacttcaagctggtctacaacaaggccgccaaactg
tgggcagaggcgctgaacgtgtttacgcaggcagcagacctgttgggcctggtctccagg
aagtccctgtggggtcagttttggtcgtcgcaccagcgcttcttcaaatacctctgcatc
gccgccaaggtgcgacgcctggtggagctggctaagaaggagttggacgctggcaagtgt
gtggtgatcgggctgcagtccacaggggaggctcgcacgcgggaagtactggacgagaat
gatggacacctggacagatttgtgtctgctgctgagggtgtcttccagtctctggttcag
aagcattttccctcagagaagcagaggagggaaaaaggggcaggaaacaagagaaaacga
aagccccggggacgtcagcccaagtgctcacggcaggcgcaagagttcgccggggtcatc
agcatcagcgacgacagtagtagcgacaccgaagccatggacagcgactccaactcctcg
cccgactcgctgcaggacaacaacgatgatgtcatcttcgtccaccagaccaacagtcac
accgcagaaatagaaaaaatgaagcaaagcctactgaccaagatctcagaactgggaaaa
gaactacctctgaacacactagatgagctcatagacaaatttggaggaccagagaaagta
tctgagatgaccgggcggaagggtcgggtggttcggcggacagatgggactgtcgcctac
gagtcgcgcgccgagcaaagctacaccatcgaccagattaacattaaggagaaggaccgc
ttcatgagcggggagaagttggtggccatcatctcggaagcggccagctcgggaatctcc
ctgcaggcagacaagcgagtgaagaaccagtgccggagggtgcacatgaccctggagctg
ccctggagcgcagaccgtgccatccagcagtttggccgcacgcaccggtccaaccagatc
acggcgcccgagtacatcttcctcatctcggagctggccggagagcggcgcttcgcttcc
attgtggccaaacgcttggagagtctgggcgctttgacccacggagacaggagagccaca
gagtcccgagatttgagcaagtacaacttcgaaaacaaatatggcaccaaggctctagat
aagatcaccaaagccatcctggggtacattgagagcaaagtgccccctcccaaagactac
cctggtggcgactctatgttcttcagtgacatgaagcaagggatgataaacgtgggcatc
ttcagccgggactcacgcttcggcctcagcactgagaaagactgcactatcaccaagttc
ctgaatcgtatcttgggtctggaggtgcacaagcagaactccctgttccagtacttcact
gacaacttcgactacctgatagagaaagacaagaaggagggcaaatatgacatggggatc
ctggatctggccccaggcaatgatgagatctacgaggagaagcaagaagagtttttgacc
gtggggaacccacacgatggccaagtcgtactgtataagatcactgtggaccgaggcatg
ccatgggaagaggccttggccaagtcccaaagcctgagcggcccagacgtgggcttctac
ctctctcacaagctgagaggcactcagccttgtgtgctgctggcagagcagggtcgaggc
cacaacctcatcatccacaagcccaacataggcaagcaggcccagcccgagagtctggac
aatatggggaaacgctaccgaaaggtcactccggaggaagcaaaggacatctgggagaaa
cagtaccagttctccttcagtaaatgcagccatgccaactggaatgggaagtgtaagaaa
gtggaggagggacaggagtgcatacagggcatgcgtctgcgtcagtaccacatgctgtgc
ggcgcactgctgcgcgtgtggaaacgcgttgcagacacagtggctgacctcaccggctcc
agcatcctgcagatcgtccgactcaagaccaaacagctccaaaagcaagtgggcattaaa
atccctgagtcgtgtgtgttgcgcgtgcgtgacgagctgcagcagatggacagtgaggtg
aggcggcggcgggagcgggagctcctccaagcacaggagttccagcggccaccagcgctg
cacaccgacgccctcggcccgctgcccttcccctccaccaccggcgagctgagcggcctt
tcccccttcctctacccgccgcccacggtgggcgcgttcccctcgctgtccaagaccccg
ctggcagacatgctggacggcccggacacagtcgccctgggtcttggcgccctcccggcc
acagccgcggacttcggcctggagtctctggagtcgcggcagcaaccgcagccaccgcag
cagcagcaggagaaggacaagtttctggagttcatggacagcatccgacagtttgatttg
acaccgctgtccaacaccccgccaccgacacctgcgtcgtcttcgcctgcagccatgtcc
tgtgtccccgccggaacagcccaagcccccggagggctctttgcgtcccaggccgtgagc
acagttgccacctcgacgtcttcctcgccgatgttctccgagatgcctttgttgactatg
cccaccactccgtgcaacagcgacgtccacattgacttccgtgaggttctcaacaccatg
ttccagaatagcaccttggacaggcagtccgtcatcaagttccctctgcagggcagggac
tcctcttaa
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