Alosa sapidissima (American shad): 121678230
Help
Entry
121678230 CDS
T11137
Name
(RefSeq) capping protein, Arp2/3 and myosin-I linker protein 3-like isoform X1
KO
K20493
leucine-rich repeat-containing protein 16
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
asad04131
]
121678230
Membrane trafficking [BR:
asad04131
]
Others
Actin-binding proteins
Nucleation-promoting factors (NPFs)
121678230
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CARMIL_C
Carm_PH
LRR_6
Myosin_TH1
Motif
Other DBs
NCBI-GeneID:
121678230
NCBI-ProteinID:
XP_041913517
LinkDB
All DBs
Position
12:14903265..14941159
Genome browser
AA seq
1789 aa
AA seq
DB search
MASKETSSCFVSVSRELTESIRKLIDKSSIKFIRGIKLETKNGKSEDRILVLTTWRLYLM
AVKVPSKVEMTFNFLEIRSISTQPDLQVVIETDKSTYSFRLQSRDHLDHVINHVNYALSR
IFNNSIFAPSICQSDSDLSDGSRKYSPSSDTSVETQRACGGFSETYAALCDYNGISCKEE
VQWDVDTIYHSQDNREFNLLDFSHLESRDLAVIVASMAYNTWFTKLYCKDLRIGSEVTEQ
VLHTLSKSSSLEEITLENVGLKSDFPQKLSVALSENPASVIHSLNLAHNTLDNQGVCNLI
QQVCRLSKGLRLLNLSKTSLSSKGVVSLSQALCSSDDYSNSLLHLDLSKNPGVLSGEDAS
NLHLFLSQPNCLVHLDLSSTDCSVDSLFGALLRGCCADLSYLNLSKNSFSHRKVKDSLPY
FRQFFSSAFSLTHVSLSSMKLPPDVLRALLMGLTSNPHINDMHLDISGCELRSSGAAVLQ
ELFPRVSSIATLDISDNGLDGDLLTLLSALSRHPSLKHLHLGKNFNIKHRVLDDVLQKLV
QMIQEEECALQSLSLVDSRLRSRGTVLVNALGSNTCLRKVDLSGNNMEDIGAKMLSKALQ
INTTLRSVTWDRNNTTATGFLDVARALEHNFTLQYMPLPLSDITQAYRSAPEKMEQALTK
IQRALLRNNQTQRFSQRQALRLHQGLVTSTAEQVMERLCVRVQQQVCALKGVGEAEELQA
AKQVLKEARNSRALYPSLCELAHVLSVDGPVRQRLDSLAGELAKAADKELQVIVDSMVSL
CRELCPLSSVAAERLSPPLSSVSERVSIPRSAIRTALMERAAQDIHRALEEVKLSVVAYL
TNSIVDQILQELYSTHKALARQVSQLKRWEGMCDGGTGRRSHRHRDSLEITDEELGTSID
TIAIKKRSSRTRRIRPVSTRLSLNDDSSSSPPPSAPPLSSPLSRSASWEGLSELPTLGTP
LQHVTRVRPKPPRKHRGGHTLSDTQLPEPCSNFQNDLEWVQANLYKHCNENGAVTPLDDG
LPDFYTKRVLPDSQLSSLHKAHSLRRKKRRNMLSIFGFRRNRNSTLSNQEPDSGGGSCSE
ECRTVATAPTGTAQENVYTLLQPPRLAGRAGSPGEGADGTVEDQRVEEPAGVMEVRSIQG
MPLPSIGENKQLYSTRQRPEPEPDYERPAASERPADRVDRQTPSTSDRQTLRHADRQPAR
DADRQTGRSTERPSERELDRQTLRQLDRKAEKQWAEGRREVERQWPDDRPADRVWTDLRP
ADRQVDRGWTDLRAAERQWAAEPKQTDRPWVDGRQTDRPAPDRHAQGPRTPTDRPLPPYP
TGDRTPSPNTQADRQVATDMHPRTDVQADRWHQSVAQIDRRIYAEVQADRQVATDVHSER
HAPSDTQVERWHHPDALIDRRIYTEVQSDRQVSTDTHADRHLHSDVHTDRWHHSDAQIDR
RIYAEVQSDRHPAVEPHMERCLSSDLQTDRRIYAEVQADRWHHSDTPTDRRIYAEIQTER
QGLLDGQTDRWHQSDGQTDRRIYAEVQAERQAERQAHGGDVQGDGYGGTSDLQTAHGSDQ
RPEVWLMEERCRMGIALPPGQSLPCGPKPDPPPQSSKPNLAKLRQRHLPDNSGAEEVTDE
DKDAGRLEKKERDGGIERTRETDGHPPPVPPKPGFVTSPQDPTNERKLPPPVPPASSKPV
LGLAERSHTQGEESVRPQAPVKPQRNRKALSCDQGNDRESPNNLEKPPNRKPPVKKPRLP
QNKNKSLEYSGICLLLFVLFHVSLPLSLSLSLSLSVCVCTCLSVYMLPV
NT seq
5370 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaaagagacatcctcctgttttgtcagcgtttccagggaactcacagaaagc
atcaggaagctcatcgacaagtcttcaatcaagttcattcgtggcatcaaacttgaaaca
aaaaacggcaaatcagaggacaggatattggttctcacaacatggaggctctatctaatg
gctgtgaaggttccttcaaaggtggagatgactttcaacttcctggagatccgttccata
agcacacagccagacctgcaggttgtcatagaaacagacaagtccacctactccttccgg
cttcagtcaagagaccacctcgatcatgtgattaaccatgtcaactatgccctgtcacga
atattcaacaactctatttttgcaccatccatctgtcaatcagacagtgacctatcagat
ggaagcaggaagtactctccaagttcagacacgtctgtcgagacacagagggcttgtgga
ggcttctcagagacatatgctgctctgtgtgattataatggcatcagctgcaaggaggag
gtgcagtgggatgtggataccatctaccactcccaagacaacagggagttcaacctgctg
gacttcagtcacctggaaagcagggacctggcagtgattgtggcgtccatggcgtacaac
acatggttcactaaactctactgcaaggacctgcggattggttcagaggtcacagaacaa
gttctgcacacgctcagtaagtcatccagcctggaggagatcacactggagaatgttggg
ctaaaatctgacttccctcagaagctgtccgtcgccctctccgagaacccagcctctgta
atccactccctcaatttggctcataacacccttgacaatcaaggtgtgtgcaatctcatt
cagcaggtgtgtcgcctgagcaaagggctgcgtctcctcaacctgtccaagacatccctc
tcctccaaaggtgtggtgtcgctctctcaggctctgtgctcgagtgacgactattctaac
tccctgctgcatctggatctcagcaaaaaccccggggtcctgtcaggagaggacgcctcg
aacctgcacctcttcctctcccagcccaactgcctggtccacctggacctgtccagcacc
gactgttcagtggactcgctcttcggtgcgttgctcaggggctgctgtgctgacctctcc
tacttgaatctctccaaaaactccttctctcacaggaaagtaaaggactctctcccgtat
ttccgccagttcttcagctcggccttctcactcacccatgtcagtctgtcctccatgaag
ctgcctcctgacgtgctgagggcgctgcttatgggcctgacatcaaaccctcacattaat
gacatgcacctggatatcagtggctgtgagctccggtcatctggagctgcggtgctgcag
gagctcttcccccgggtttcctccatcgccacgctggacatctcagacaacggtctggat
ggagacttgctcactctgctgtctgcactatccaggcacccctccctgaagcacctacat
ctggggaaaaactttaacattaagcacagagtgctggatgacgtgcttcagaagctggtg
cagatgatccaagaagaggagtgtgcgctgcagtcgctctctctggtggactccaggctg
cgctcacggggcacggtgctggtcaacgccctgggcagcaacacctgcctgcgcaaggtg
gacctaagcggcaacaacatggaggacatcggggctaagatgctgagcaaagccctgcag
atcaacaccacgctcaggagtgtaacatgggaccggaacaacaccaccgccacaggattc
ttggacgtggcccgagcactggaacataatttcacattgcagtatatgcccctgcccctc
agtgacatcacgcaggcctaccgcagtgcacctgagaagatggagcaggcgctcaccaag
atccagagagctctcctgaggaacaaccagacccagcgcttctcccagagacaggctctc
cgtctgcatcagggcctcgtcaccagcacggctgaacaggtaatggagcgcctgtgtgtg
cgcgtccagcagcaagtgtgcgctctgaagggtgttggagaggcggaggagctgcaggcg
gccaaacaggtgctcaaggaggccaggaactcgcgggcgctgtacccatccctgtgtgag
ctggcccatgtgctctcagtggacggaccagtacgtcagcggctggactctctggctgga
gaactggcaaaagctgcggacaaggaacttcaggtgattgtggactccatggtgtccctg
tgtcgagagctgtgtccactctcctcggtggcggccgagcgcctgagccctcctctctcg
tccgtctctgagcgcgtctctatccctcgctccgccatccgcaccgcactgatggaacgg
gcagcgcaggacatccaccgggcactcgaggaggtgaaactgtcggtggtggcctatcta
accaactccattgtggatcagatactgcaggagctctactctacccataaagccctggct
cggcaggtgtcccagctcaaacggtgggagggcatgtgtgatggagggacgggcaggaga
tcacacagacacagagactcactggagatcactgatgaagagctcggcaccagtatagac
accatcgctattaagaagcggagctccagaacgcgtcgcattcgacctgtgtccacccgg
ctgagtctgaatgatgactccagttcgtcccctcccccctccgcacctcctctctcctca
cccctctcccgctcggcctcctgggagggcctgtcggagctgcccactctgggcacgccc
ctgcagcatgtgacccgcgtccggccaaaacccccacgcaagcaccgcggcggccacacc
ctctccgacacgcaactgccagaaccctgctccaatttccaaaatgatttggaatgggtc
caagctaatctttacaaacattgcaatgaaaacggggcagtcacgcctcttgatgatgga
ctgcctgatttttacaccaagagagttctgcctgacagtcagctctcatctctccacaaa
gcccactcgctacggagaaagaaacggcgcaacatgctctccatcttcggtttccgtagg
aaccgcaactcgactctgtctaatcaagagccggactcaggtggcgggtcctgcagtgaa
gagtgccgaaccgttgccacggcacccacaggaaccgcccaggaaaatgtttacactctc
ctccagccgccgaggttggcgggcagggccggctccccgggagaaggggctgatgggact
gtggaggaccagagagtggaggagcctgctggcgtcatggaagtaaggtccatccaaggc
atgccacttccaagcataggagagaacaagcaactttattcgaccagacagagaccagag
cctgaaccggactatgagagaccagcggcatcagagagaccagcagacagagtggaccgg
cagactccgtccacgtcggacagacagacgttgagacacgcagacagacagcctgcaaga
gatgcagacaggcagacaggcaggtcaacggagaggccgtcggagcgggagttggacaga
caaacactgagacagctggacaggaaggcagagaaacagtgggccgagggcaggagagag
gtggagagacagtggccagacgacaggccggctgaccgggtgtggacggacctccggccc
gcagacagacaggtggaccgaggctggaccgacctgcgggcggcagagagacagtgggcg
gcggagccaaagcagacagacaggccctgggtcgatggcaggcagacagacaggccagcg
ccagacagacatgcccagggcccgcgcacccccacagacaggccgctgccaccgtacccc
actggagaccgaacaccatcaccgaacacgcaagcagatagacaggtggccacggacatg
cacccacgcacagacgtgcaggcagataggtggcaccagtcggtcgcgcagatcgacagg
aggatttacgcagaggttcaggcagacagacaggtggccacagacgtgcactcagagaga
cacgcgccgtccgacacgcaggtggagaggtggcatcacccggacgcccttatagacagg
cgaatatacacagaggtgcagtcagacagacaggtaagcactgacacgcatgcggataga
catctacactcagatgtgcacacagacaggtggcaccactctgatgcacagatcgacagg
cgaatatatgcagaagttcagtcagacagacacccagctgtagagccacacatggaaaga
tgcctgtcgtcagatctgcagacagacaggcggatatatgcagaagtgcaagcagacagg
tggcaccattcggacacgccgacagacaggcgcatctacgcagagatccagactgagaga
cagggactcctggacgggcagacagacaggtggcatcagtcggatggacagacagacagg
cggatttatgcagaggtgcaggcagagagacaggcagagagacaggctcacgggggagac
gtgcagggagatgggtacgggggtacgtcggacctgcagacagcccacggcagcgaccag
cggccagaggtgtggttgatggaggagcgctgtagaatgggaatagcgctccctcctgga
cagtccctgccctgcggccccaagccagaccctcctccacaaagcagcaagcccaacctg
gccaagctcagacagcgccatctgcctgacaattctggtgctgaagaggtgactgatgaa
gacaaggatgcagggaggctggaaaagaaagagagagatggagggatagagagaaccaga
gaaacagatggacatccaccccctgtgcctcctaagccgggttttgtgacatcaccacaa
gatccaaccaatgagagaaagctcccacctccggtgccccctgcctctagcaaaccagtg
ctaggattggctgaaagatcccacacacaaggtgaggagagtgtgagaccccaggcccct
gtgaagccgcagaggaacaggaaggccctgtcatgtgaccaagggaacgacagggaaagc
cccaataacctggagaagcctccaaatcgcaaaccccccgtgaaaaaacctagacttcct
cagaacaaaaacaaatctctggaatactctggtatttgtttgctcttgtttgtgcttttt
catgtttctctccctctctctctctctctctctctctctctctctgtctgtgtctgtaca
tgtttgagtgtatacatgctgcctgtgtga
DBGET
integrated database retrieval system
