Alosa sapidissima (American shad): 121678336
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Entry
121678336 CDS
T11137
Symbol
si:dkey-110c1.10
Name
(RefSeq) unconventional myosin-Vb
KO
K10357
myosin V
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
121678336 (si:dkey-110c1.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121678336 (si:dkey-110c1.10)
04131 Membrane trafficking [BR:
asad04131
]
121678336 (si:dkey-110c1.10)
03029 Mitochondrial biogenesis [BR:
asad03029
]
121678336 (si:dkey-110c1.10)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
asad04812
]
121678336 (si:dkey-110c1.10)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
121678336 (si:dkey-110c1.10)
mRNA cycle factors
P-body specific factors
121678336 (si:dkey-110c1.10)
Membrane trafficking [BR:
asad04131
]
Others
Actin-binding proteins
Myosins
121678336 (si:dkey-110c1.10)
Mitochondrial biogenesis [BR:
asad03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
121678336 (si:dkey-110c1.10)
Cytoskeleton proteins [BR:
asad04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
121678336 (si:dkey-110c1.10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
nSTAND3
AAA_22
Myosin_N
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
121678336
NCBI-ProteinID:
XP_041913731
LinkDB
All DBs
Position
12:15251127..15271170
Genome browser
AA seq
1657 aa
AA seq
DB search
MATTELYTKGACVWVPDTDSVWVSARLVRDFSPGDGQLQLQLSDGREVSYPVTDATGLPP
LGNPDILEGENDLTALTFLHEPAVLHNLRVRFLDYSSIYTYCGIVLVAINPYESLPIYGE
EVIDAYSGQDMADMEPHIFSVAEEAYRTMTREEKNQSIIISGESGSGKTVSAKFTMRYFA
VVGGAAQQTSVEERVLASNPIMEAIGNAKTTRNDNSSRFGKYIEIGFGRKGDIIGANMRT
YLLEKSRVVFQASMERNYHIFYQLCASKDLPEMRVLKLEAAEYFRYTNQGEETQIPGTDD
VVELERTRNAFTILGVQSDQQMELFRILAAVLHLGNINIQASGRGGDRSYIDTEDRSLAL
FAKLLGVEGAQMAHWLCHRRLAVGGEMLVKPMPGRQAVEARDALAKHIYGQLFSWTVQRL
NAALRAQREQPKSFIGVLDIYGFETFDRNSFEQFCINYANEKLQQQFNRHVFHLEQEEYV
REELPWNRIEFSDNQPCIDLIEGSLGLLDLLDEECRMPKGSDESWARKLYDQHATKCAHF
RKPRMSNTAFIILHFADTVQYECDGFLDKNRDTVFEEPINIMKASQSELVAELFQQDSAG
GAVKLSVPNGSLRSGKRGHREHKLTVGFQFRQSLQLLMETLNSTTPHYVRCIKPNDLKEP
FVFDPKRAVQQLRACGVLETIRISAAGYPSRWTYEEFFSRYRVLLRGSLSPAEVRASCQR
TLSELIPDSEQYCFGRTKVFFRAGQVAVLEKLRSERLHVAGVVIQSWVRGWLGRRRYLRL
RWATLTLQRYARGGLARRLAQTLRYTRAALVIQKTYRMVVVRQLYWMIREATITIQAFTR
GTLVRRNYRKLLEERAAVCLQAAVRGWLQRRTYGRVRAAVVLMQCCLRRRLARKELQKLR
AEARSVEKFRELNKGMEVKLMQLQLRADQQARESGSLRETLHAERVAHSAELEQLRGALH
RLEVQLQDQPQRTRKISEREEEERRKIDERTTSEILHLTQEIEALKEERDGLLKDKEELS
ARLLEQEKEQADCVQKAVSRAGEGVQAELEEERRRYQGLLREFTRLEQRYDNLRDMSLLT
ERPRGHRRTDSTQSLVLETPSPSPSTHGFFFPSPEEVRRVSVTSPTFDRRPLSPDGPLNV
LMEEVGVAKDTADKMQGEDLRHAYDAVRVANKFLETQLLTQRRQWEEELAALRLQVKGSD
RERPPSATQTSADLQELLEQVEVRELECCRLRKELTDLRSVARLRRVLALTGPAVSSSTP
QASATPQKKGGSAGGLLECRKKDEAKLIKTLVTDVRVDIALSLPLGLPARVLFLCVRQAD
CSGDQARARSLCTAAAAGIKAALKKHCNDLDMTALWLKNTCLLADLLTQHSAKQDPGACE
DLLPLAFDVSETSRALSDLRIQAYQQLLSICESRLQPIIVPAMLESETIPGLSGSAAKLV
SSRKRAGSDPRAPGSEAPTMAQVLRELGALHAALTRQELPLPLLEQALRQLSHLLVASAL
NCLLLRKDMCCWNRGLQIRYNVSLLEEWLRGRGLQAGGAVATLEPLIQAAQLLQMSKKSE
ADAAAMVQTCHVLSTQQIVKILTLYTPQSDAEERVTLNFIRIVQGQLKERSDGQPPQLLM
DVRRVFPVTFSYQPPPPQHAEQLAIPESLKISFLRKA
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atggctacaactgagttatacaccaagggtgcgtgtgtgtgggtgcccgacactgacagt
gtgtgggtgtccgctcggcttgtgcgggacttcagcccaggagatggccagctccagctg
cagctaagcgatggcagggaggtttcctacccagtcacagacgccactggactccccccg
ctgggtaaccctgacatcctggagggggagaatgacctgacagctctcaccttcctgcac
gagccggctgtcctgcacaacctgcgggtccgcttcctggactacagcagcatctacacc
tattgcggaattgtactggtggccataaacccatatgagtcgttacccatatacggggag
gaggtgatcgatgcctacagtggacaagacatggcagacatggagccccatatattctct
gtggctgaggaagcctaccgcaccatgaccagggaggagaagaaccagtccattatcata
agtggcgagtctggctcagggaagaccgtgtctgccaagttcaccatgcgctactttgct
gtggtggggggtgctgcccagcagactagcgttgaggagagagtcctggcatctaaccct
atcatggaggctattggcaatgccaaaaccacacggaatgacaacagcagccggtttggg
aagtacatagagattggatttggacgcaagggtgacatcattggagcaaacatgagaaca
tatttattggagaaatctcgagttgtttttcaggcttccatggagagaaactatcacatc
ttctaccagctttgtgcctctaaagacctgcctgagatgagggtactcaaactagaggca
gctgagtacttccgatacaccaaccaaggggaagagacccagattcctggcacagatgat
gttgttgagctagagcgcactcgtaatgccttcaccatactgggcgtgcagtcagaccag
cagatggaactgttccgcatccttgcagctgtcctgcacctcggaaacatcaacattcag
gccagtggcagaggaggagaccgcagctacattgatacggaggaccgctcgctggcgctg
tttgccaagttgctgggcgtggagggggcgcagatggcccactggctgtgccaccggcgg
ctggcggtgggtggcgagatgctggtgaagcccatgccgggccggcaggccgtggaggcg
cgggacgccctcgccaagcacatctacggccagctcttcagctggactgtgcagaggctc
aacgctgccctgcgcgcacagagggagcagccaaagtccttcatcggagtcctggacatc
tacgggtttgaaacatttgacaggaacagctttgaacagttctgcattaactacgctaac
gagaaactgcaacagcagtttaacagacatgtgttccacctggagcaggaggagtatgtg
agagaggagctgccctggaaccgcatcgagttcagtgacaaccagccctgcattgacctg
atcgagggctcactcggcctgctggacctgctggatgaggagtgtaggatgcccaagggc
tcagatgagagctgggccaggaagctgtatgaccagcatgccacgaagtgcgcccacttc
cgcaagccccgcatgtccaacacagccttcatcatcctgcactttgctgatacggttcag
tatgaatgtgatgggtttttagacaagaaccgtgacacggtatttgaagagcctatcaat
atcatgaaagcaagccagtcagagcttgttgctgagttgttccagcaggattcagcaggg
ggcgctgtgaagctgtctgtgcccaacgggagtctgcgctccggcaagagaggtcaccga
gagcacaagctgacagtgggctttcagtttcgccagtctctccagcttctgatggaaacc
ctgaacagcaccactcctcactatgtccgctgtataaagcccaatgatctcaaagagcca
tttgtctttgaccccaagagggcggtccagcagctgcgagcctgtggagttctggagacc
atacgcatcagcgccgcaggatacccatcaagatggacttacgaagagttcttcagccgg
taccgtgtgctgctacggggttccctcagtccggcggaggtgcgtgctagctgccagcgg
accctgtcagaactcatccccgactcggagcagtactgcttcggcaggactaaggtgttc
ttccgggcgggccaggtggccgtgctggagaagctgcggtcagagaggctgcatgtggcc
ggggtggtcatccagagctgggtgcgcggttggctgggccgccgccgttacctccgcctc
cgttgggccaccctcaccctgcagagatacgcccgcgggggactggccaggaggctggct
caaactctccgttacacacgcgcggcgttggtcatccagaagacgtaccgcatggtggtg
gtgcggcagctctactggatgatccgagaggccaccatcacaatccaggccttcaccaga
ggcacgctggtgcgcaggaactaccggaagttgctggaggagcgtgctgccgtgtgcttg
caggctgcggtgcgcggctggctgcagcggcggacttacgggcgcgttcgggccgccgtg
gtgctgatgcagtgctgcctgcgcaggcgtcttgcccgcaaagagctgcagaagctgcgg
gcagaggcgcgctctgttgagaagttccgcgagctcaacaagggcatggaggtcaagctg
atgcagctacagctccgcgctgaccagcaggccagggagagtggcagtctacgggagaca
ctgcacgcggagcgtgtcgcccactcagccgagctggagcagctccgcggggccctgcac
cgcctggaggtccagctgcaggatcagccccagaggacccgcaagatctccgagagagag
gaggaggagaggaggaagatcgatgagaggacgaccagcgagatcctccacctcacacag
gagatagaggctcttaaggaagagagagatggcctgctgaaagacaaagaggagctctct
gcacgtttactggagcaggagaaagaacaggcagactgtgtccagaaggcggtgtcgcgg
gcaggagagggcgtccaggcggagctggaggaggagcggcgtcgctaccagggcctgctg
agagagttcacccgcctggagcagagatacgacaacctgcgcgacatgagcctgctcacc
gagcgcccgcggggacaccggcggacggactcgactcagagcttggtcctggagaccccc
tccccctcccccagcacgcacggcttcttcttcccgtcgcccgaggaggtgcgcagggtc
agcgtgacctcgcccaccttcgacaggagacccctcagcccagatggccccctgaacgtg
ctgatggaggaggtgggggttgcaaaagacacggctgataagatgcaaggggaagatctc
aggcatgcatatgacgctgtgcgtgtggccaacaagttcctggagacccagctgttgacc
cagcgcaggcagtgggaggaggagttggctgccctgagactgcaggtcaaggggtcagac
agagagcgtccaccgtctgcaacccagaccagcgcagacctgcaggagctgctggagcag
gtggaggtgagagagttggagtgctgtcgcctgaggaaggagctgacagatctgaggagc
gtggccaggctgaggagggttctggctctcacaggccctgcggtgagctcttccactccc
caggcctccgccacccctcagaagaaaggggggagcgccgggggcctgctggagtgccgc
aagaaggacgaggccaagctcatcaagaccctcgtcacagacgtgcgtgtggacattgcc
ctgtcgctgcccctgggtctgcccgcgcgggtgctcttcctgtgcgtgcggcaagccgac
tgcagcggggaccaggcacgggcacgctccctctgcaccgccgccgcggccggcatcaag
gccgcactcaagaagcattgtaatgatctggacatgactgctctatggctgaagaacacc
tgcctacttgcagacctcctcacccagcattcagcaaagcaggatccgggtgcttgtgag
gacctcctgccactggcgtttgatgtgagcgagacgagccgggcgctgagtgacctgcgt
atccaggcctatcagcagctgctgtccatctgcgagagccggctgcagcccattatcgtt
ccggccatgctcgagagcgagaccatcccaggtctgtctggctcggccgctaagctggtc
agctctcgtaagcgggccggttcggatccacgtgcgccgggctcggaggcgcccaccatg
gcacaggtcctacgtgagttgggcgcgctgcatgcagcgttgacccgtcaggagctgcca
ctgccgctgctggagcaagccctgcgtcagctcagccacctgctggtggccagcgccctc
aactgcctgctgctgcgcaaggacatgtgctgctggaaccgaggccttcagatcaggtac
aacgtgagcttgctggaggagtggctgcgtggccgtgggctgcaggcagggggcgctgtg
gccacactggagccactgatccaggcagcccagctcttgcaaatgagcaagaagtcggag
gccgatgcagcggcaatggtccagacttgccatgtgctgtcgactcaacagattgtcaag
attttaactctttacaccccgcaaagtgatgcagaggagagggtcacacttaatttcatt
cgtattgtacagggtcagctgaaggagcgttctgacggccagcccccacagctgctgatg
gacgtgcgcagggtctttcccgtcaccttctcctaccagccgcccccaccccagcatgct
gagcagctggccatccccgagtccctcaagatctccttcctccgcaaagcctaa
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