Alosa sapidissima (American shad): 121679672
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Entry
121679672 CDS
T11137
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asad03021
]
121679672 (chd1)
03036 Chromosome and associated proteins [BR:
asad03036
]
121679672 (chd1)
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
121679672 (chd1)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
121679672 (chd1)
SLIK complex
121679672 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CHD1-like_C
CDH1_2_SANT_HL1
Helicase_C
Chromo
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
121679672
NCBI-ProteinID:
XP_041914503
LinkDB
All DBs
Position
13:complement(12647033..12670565)
Genome browser
AA seq
1830 aa
AA seq
DB search
MDGRSEDESVSNSSGESSNSDDESGSGSGSGSGSSSSSSSSSSSQSGSSDSGSGSDSGSQ
SDSDSEKSKKAEPAKIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQQQQQQQQHQQQQQS
SSNSSDEDSSSSDDSDDDSSREKSKGSGSGSDSDSGSGSDSGSNSGSDSSGEEQEENSDA
SASDYEPSHKVKSRKPPTKANARNGKKSKAQRKKPPTGSSSDEDDFDKKALAGPRRQATV
NVSYKEDDELKTDSDDLVEVTGEDVPQPEEDEFETLERVMDTRVGRKGATGATTTVYAVE
ADGDPNGTFNPHKEAGDVQYLIKWKGWSHIHNTWETEDTLKLQNVKGMKKLDNFKKKKSE
ERKWLKAASPEDVEYFNCQQELMDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLPY
SECSWEDGALIGRKFQKCIDDYMCRNHSKTIPYRDCKVLKQRPRFMPMKKQPSYITEGLE
LRDYQLDGLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYMFHEHQLYGPFLLVVPLS
TLTSWQREIQLWAPQMNVVVYLGDINSRNMIRTHEWMHVQNKRLKLNILLTTYEILLKDK
SFLGNVSWAFIGVDEAHRLKNDDSLLYKTMIEFRSNHRLLITGTPLQNSLKELWSLLHFI
MPEKFHSWELFEDEHGMGRDSGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSA
IQKQYYKWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDNEFYNRQEAL
QHLIRSSGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILAEYLKSRQFLFQRLDGSIKG
EMRRQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHR
IGQKRQVNIYRLVTKGSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSTPF
NKEELSAILKFGAEELFKEPEGEEQEPQDMDIEEILKRAETRENDPGQSSIGEELLSQFK
VANFSMMEEEEMDMDPERGHRNWDDIIPEEQRRRLEEEERQKELEEIYLLPRMRNCAKQI
SFNGNEGRRSRNRRYSGSDSDSVSDRKRPKKRGRPRTIPRENIKGFTDAEIRRFIKSYKK
FGGPLERLDAIARDAELVDKSEHDLRRLAETVHNGCVRTLRENPCGPEKTSGGRRGKVKG
PTFRISGVQVNAKLVISHEEELAPLHKAIPADPEERKRYKLPCHSKAAHFDIEWGKEDDA
SLLIGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAK
KEAQRQAGTANSRKRKPRGKKNKNVKPAKVDEAVNSMSSAPPSDKSSEEEEDKEEEREVA
PVKPPTRRGRAEPVVVKQEEEEEEDSEPEPLTPKEPEEKEKEKDREVKKEIKKEKKEDGR
DGKEKREPKEKKEAKPPEPVTRVEEPPVEKMVEIKAEVREKGGKKADTPVHIASGGENVP
ISEESEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITEC
LKEYTNPDQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAADQNTSTVNTQ
SFKHSDIERLKDNSHQDDSSRDSYSSDRHHSSSTRYHSGSEQSKEPRHGSESYRKGSDTR
KRPYSSFSNGKDLRDRDRDRDRDRDQYRSERQDSRYYSDSKHRKLDDHRSSRDHRAESSS
KDRHSDHRHSDHRSDRHSGSDYSSHHKSSRDYRYHSDWQSDHRASGSGPRSPRDQRSPYE
SRSPMGHRSPFEYSSDHKSTPEQIWSSRKT
NT seq
5493 nt
NT seq
+upstream
nt +downstream
nt
atggacggacgcagtgaagacgaaagtgtgagcaacagcagtggagagtcaagtaactct
gatgatgagtctggatccggatcgggttctgggtcaggctccagctccagcagcagtagc
tccagcagcagccaatcagggagcagcgactcaggaagtggctccgactccggcagccag
tccgattcggactcagagaagtccaagaaagctgaaccggcaaagattgatggggcagag
ttttggaagtcaaaccccagtatcctagcagtgcaaaggtcagccatgctcaggaaacag
cagcttcagcagcagcagcagcaacaacagcagcagcagcatcaacagcaacagcaaagc
tcttcaaacagctcggatgaggactcttccagcagtgacgactctgatgatgattcgtcg
agagagaaaagcaaagggtctggttcaggctcggattcagattccgggtcagggtctgat
tctggcagcaactctggttctgattcctctggcgaggagcaggaagaaaacagcgacgct
tccgcatcagactatgaacctagtcacaaagtcaagagccgcaagccacccaccaaggcc
aatgccaggaatggcaaaaagagtaaagcacagaggaagaagccgccgacgggctcttcc
tcggacgaggatgactttgacaagaaggcgctggccggcccacgccggcaggccacggtc
aatgtgagctacaaggaggatgacgagctcaagaccgactcggacgacctggtggaggtg
accggcgaggacgtgccgcagcctgaggaggacgagtttgagacgctggagcgagtgatg
gacacgagagttggcaggaaaggagccacgggagccaccactacagtgtatgcggttgag
gcggacggagaccccaacgggaccttcaacccccacaaggaggctggagacgtccagtac
ctgatcaagtggaagggctggtcccacattcacaacacctgggagaccgaggacacactc
aagctgcagaacgtcaagggcatgaagaaactggacaacttcaagaagaagaagtcagag
gagaggaagtggctaaaagcagcatcaccagaggatgttgagtactttaactgtcagcag
gagcttatggatgacttgcactctcagtaccagcttgtggagagaattattggccactca
aatcagaagtcggcggcaggttatcctgactacctgtgtaagtggcaggggcttccttac
tccgagtgcagctgggaagatggcgccctcatcggcagaaaattccagaagtgcattgat
gattacatgtgccgcaaccacagcaagaccattccttacagagactgcaaggttttgaag
cagaggccgaggtttatgcccatgaagaagcagcccagctatatcacagagggcctagag
ctgcgagactaccagctggacggcttaaactggatggctcattcctggtgcaaagggaac
agctgtatcctggcagacgagatggggctggggaaaaccatccagaccatctccttcctc
aactacatgttccatgagcaccagctgtacgggcccttcctgctggtggtgcccctgtct
accctcacctcctggcagcgcgagatccagctctgggccccacagatgaatgtggtcgtc
tacctgggcgacatcaacagcaggaacatgatcagaacgcatgagtggatgcatgttcag
aacaagcgactgaagctcaacatattgctcaccacttatgagattctcttgaaagataag
tcattcctggggaacgtgagctgggccttcatcggcgtggatgaggcccaccggctgaag
aacgacgactcgctcctctacaagacgatgatcgaattccgctccaaccacaggctcctt
atcacagggacgccactgcagaactccctcaaagagctctggtcgctactgcacttcatc
atgccagaaaagtttcactcgtgggagctgttcgaggacgagcacgggatgggccgcgac
tccggctacgccagcctccacaaggagctggagcccttcctgctgcgccgcgtcaagaag
gatgtggagaagtcgctgcccgccaaggtggagcagatcctccgggtggagatgagcgcc
attcagaagcagtactacaagtggattttaaccagaaactacaaagctcttagcaaaggc
acaaagggcagcacgtcaggctttctcaacatcatgatggagcttaagaagtgctgtaac
cactgctacctcatcaagccgccagaggacaacgagttctacaacagacaagaggcgctg
cagcacttgatccgtagcagtgggaagctggtgttgctggacaagctgctggttcggctg
aaggagcgaggccaccgtgtgctcatcttctctcagatggtccggatgctggacatcctg
gccgagtacctgaagagccggcagttccttttccagcggttagatggctccatcaaaggc
gagatgagaaggcaggcactggatcatttcaacgcagagggctctgaggatttctgtttc
ttgctgtccacgcgggctgggggtctgggtatcaacctggcatctgcagacacagtggtc
atcttcgactcggactggaacccccagaatgacttgcaggctcaggccagagctcacagg
attggtcaaaagagacaggtgaacatctaccgactggtgaccaaagggtcagtagaggaa
gagatcatcgagcgggccaagaaaaagatggtgttggaccacctggtcatccaaagaatg
gacaccaccggcaagactgttctacatacgggtgctgctccctccagttccaccccgttc
aacaaggaggagctgtcagccatcctcaagtttggtgcagaggagctcttcaaggagccc
gagggggaggagcaggaaccacaggatatggatattgaggagatcctgaagagagcagag
accagggagaatgaccctggccagtcaagtataggagaagagctcctgtctcagttcaag
gtggcaaacttctccatgatggaggaggaggagatggacatggacccggagcggggccac
aggaactgggacgacatcatccccgaggagcagcggcggcgcctggaggaggaggagcgc
cagaaggaactggaggagatctacctgctgccgcgcatgaggaactgtgccaagcagata
agctttaacgggaacgaaggcagacgcagccggaatcggaggtactcgggctcagacagc
gactccgtgtccgaccgcaagaggcccaagaaacgcggcaggcctcggaccatcccacga
gagaacatcaaaggcttcacagacgctgaaattcgaagattcatcaagagctacaaaaaa
tttggcggccctctggaaaggttagatgcaattgcgcgagacgcagagctggtggacaag
tcggagcacgacctgagacgactggcggagacggtgcacaacggctgcgtgaggacgctg
agggagaacccctgtggtccagagaagacctccggaggcagacggggtaaagtgaagggg
cccacattccgaatctccggggtccaggtgaacgccaagctggtcatctcccacgaagag
gagctggctcccctccacaaggccatccccgcagaccccgaggagaggaaaaggtataaa
ttaccttgccattcaaaggcagctcactttgacattgaatggggcaaagaagatgatgcc
agtttgctcataggcatttatgagtatggctatgggagctgggagatgatcaaaatggac
ccagacctcaacctgactcataagttgttgcctgacgaccccgacaagaagccccaggcc
aaacagctccagacgagagcggactacctcatcaaattactgagcaaagacctggccaag
aaggaggcgcagcgacaagcgggcacggccaactctcggaagaggaaacccaggggcaag
aagaacaaaaatgtgaagccagcaaaggtggacgaggcggtaaacagcatgtcctcagcg
cctccttcagataagagctcagaggaggaggaggacaaggaggaagaaagggaagtggcc
ccagtgaaacctcccaccagaagggggcgggcggaacctgtggtcgtcaagcaagaggaa
gaggaagaggaggactctgagcctgagcccctcacccccaaagagcctgaggagaaggag
aaagagaaggacagggaggtgaagaaggagatcaagaaggagaagaaagaggatggtcgc
gacggcaaagagaagagggaacccaaggagaagaaggaggccaagcccccagagcctgtg
actcgggtagaggagccaccggtggagaagatggtggagataaaagccgaggttcgggag
aagggagggaagaaggccgacacgccagtccacatcgcttcagggggagagaatgttccc
atctcagaggagtcagaggagctggaccagaagaccttcagtgtgtgtaaggagcgcatg
cggccggtgaaggcagccttgaagcagttagaccggccggagaagggcttgtcggagcgc
gagcaactggaacacacccgccagtgcctcatcaagatcggagaccacatcaccgagtgt
ctgaaggagtacaccaacccagaccagatcaagcagtggaggaaaaacctctggatattt
gtgtcaaagttcactgaatttgatgcaagaaaattgcataaattatataagcatgccata
aagaaaagacaggagaatgctcaggcagcggaccagaacactagcactgtaaatactcaa
agctttaaacactcggacattgaaaggttaaaggacaactcgcaccaggacgacagcagc
agggacagctacagttcagaccgtcaccactcgtcgtcaacgcgctaccacagcggcagc
gagcagagcaaggagccgcggcacggcagcgagtcgtacaggaagggcagcgacacccgc
aagaggccctactcctccttcagcaacggcaaagacctccgggaccgggaccgggacaga
gatcgagatcgagaccagtaccgatcagagcgtcaagacagcagatactacagcgacagc
aagcacaggaagttagacgaccaccgctcgagccgagatcatcgggcagagagcagctcc
aaggaccggcactccgaccaccgacattcagaccaccggtccgaccgccactcaggctcg
gactacagcagccatcacaagtcgtcccgcgactaccgctaccactcggactggcagtca
gaccacagggcatcaggcagcgggccccggtcgccccgcgaccagcgctccccgtatgag
tcgcgctcgcccatgggccaccgttcgccgttcgagtactcgtccgaccacaaaagcacg
cccgagcagatctggagcagccgcaagacataa
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integrated database retrieval system
