Alosa sapidissima (American shad): 121680021
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Entry
121680021 CDS
T11137
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
asad03041
]
121680021
Enzymes [BR:
asad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121680021
Spliceosome [BR:
asad03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121680021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
OB_NTP_bind
R3H
DEAD
Ank_2
HA2_N
Ank
AAA_19
AAA_22
nSTAND3
ATPase
PhoH
AAA_16
T2SSE
SRP54
Motif
Other DBs
NCBI-GeneID:
121680021
NCBI-ProteinID:
XP_041915098
LinkDB
All DBs
Position
13:complement(16805193..16841415)
Genome browser
AA seq
1405 aa
AA seq
DB search
MSRPNTSPKPTMSHNRQSGSYRGKGLKDIRIDEEVKIAVHISLERFQYSDQKEMEFPSSL
TSTERAFIHRFAQSQGYISKSRGKGSNRFLTIRKKDGSESAQSIMTFSLSPCSKQVVRNL
LQRFPMTNKEITDLLPRTERGISVALEAGDNGRDKNRTSGRLNNGIPQVPPRRGQSELDH
FRRSLPVYERQEEIVKIIKDNRVILVLGETGSGKTTQIPQFLLDDCSRNGIPCRIFCTQP
RRLAAIAVAERVAAERGESIGQTIGYQIRLESRVSPKTLLTFCTSGVLLRTLMAGDATLS
TVTHVIVDEVHERDGLSDFLLTKLRDLLQKMPTLKLILSSAALDIDLFVRYFGTCPVIHI
KGRPFEVKQLFLEDVLRTTGYANKDMLKYKKEMQKVEKQQTSLTEWCKIREGVPRQETQR
DKMAARILHENDLLDDGGDGVFSQLNEKDVASLDPWLLKEMDACISDIFLNEDNDAFVQL
FNLILSENVSVDYRHSDTSTTPLMVAAARGFISQAEQLLSMGASISLKASNGWTALDWAK
HFNQAEVVDLLEAFISSQEAGGKQDESSLVKSSSAELNAEDQELLKVYHHSFDDEKVDLD
LIMHLLFNICQSSDEGAVLIFLPGYDEIVSLRDRILYDDKRFADQPQRYQVFTLHSNMQT
SDQKKVLKNTPVGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNHVTMLKMVW
ISKASATQRKGRAGRCRPGICFHLFSRLRFDNMLEHQVPQLLRMPLQELCLHTKLLAPIT
CPIAEFLSRAPEPPHTLSVKNAVQMLKTIDAMDPWEDLTELGYHLADLPVEPHLGKMVLC
AVVLKCLDPILTIACTLAHRDPFVLPSQASQKRAAMLCRKRFTAGTFSDHMALLRAFQAW
QKARSDGWERSFCEKNFLSQATMEIIIGMRTQLLGQLRAIGFVRARGGGDIRDVNLNSEN
WAVVKAALVAGMYPNLLHVDRESAALMGAKEKRVRFHPTSILSQPQFKKMPPANGQVAAV
QSLPTDWLIYDEMTRAHRIASVRCCSTVTPLTVGIFGGCAKLPSTALQEPTVQRDDMNES
SDSEMEDRSTAHLAQMKIDDWLNFKLDRETANLAFQLRQKWHGLFLRRIRAPSKPWSQLD
ESTLRALVSAMAAEEQAAGLQQPTGIGQRPRPMASDEPPQPSSWRTAQSRRGPGGDHEPA
DEPSVSIDRPPRSCPSPAMLPLKGPREKGATHSKRPEDHIPKAGGESPGTSPTSTSSGKC
SKSSSPRTVSSVRYFIMKSSNLRNIELSQQRGIWSTTPSNELKLNRAFQDSSLVFLVFSV
QGSGHFQGYARMVSEIGQERCQDWGSSGLGGVFSVEWIRKESLPFQCTYQLLNPWNDNKK
VQISRDGQELEPQAGAQLLKLWERL
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgaccaaacacctccccaaaaccaaccatgtcccacaacagacagtcgggctct
tacagggggaaaggactgaaagacatccgcatcgatgaagaggttaaaatagcggtgcac
atttctctggagcgatttcagtacagtgaccaaaaagaaatggaatttccttcctccttg
accagcactgagagggcattcatacatcgctttgcccagtcacagggatatatttcaaaa
agccgtgggaaggggtcaaaccggttccttactataaggaagaaggacggctctgaatcc
gctcagtccatcatgaccttcagtctcagcccctgctccaaacaggtggtccggaacctt
ctccagaggtttccaatgacaaacaaagagatcacagacctgctcccgcgtactgaacga
gggatatctgttgctttggaagctggtgataatggccgggacaagaacaggacgagcggg
cggttaaacaacggcatccctcaggtaccccccaggagagggcagtcagagttggaccac
tttcgtcgctccttgcccgtgtacgaacgtcaggaggagattgtgaagatcatcaaggat
aaccgtgtaattctggttttgggtgagaccggctctggcaagactactcagattccccag
ttcctactggacgactgcagccgtaacgggatcccctgtcgcatcttctgcactcagcca
cggcgcctggcggccatcgctgtggcagagagggtggccgccgagcgaggagagagtatc
ggccagaccattggttaccagattcgcctagagagcagagtttctcccaagactctactg
acgttctgcaccagtggggtcctgttacggaccctgatggcaggggatgctaccctctca
acagttacacacgtcatagtggacgaggtccatgagcgagacggcctgagcgacttcctc
ctgacgaagctgagggacctgctgcagaagatgcccacactgaagctcatcctctccagc
gccgctctggacatcgacctctttgtgcgctacttcggcacctgtcccgtcattcacatt
aaaggaaggccatttgaggtcaaacagcttttcctggaggatgttttacggaccactggc
tatgcaaacaaagacatgctgaagtacaaaaaggaaatgcagaaagtggagaagcagcag
acgtcgctgacggagtggtgtaagatacgcgagggtgttcccagacaagagacccagaga
gacaagatggccgcccgcatcctccatgagaacgacctgctggacgatggaggggatggc
gtcttcagtcagctgaatgagaaagatgtggcatcactagacccctggttactgaaggaa
atggatgcctgcatctcggacatcttccttaatgaagacaatgatgcctttgtccaactc
ttcaacctcatcctgagtgagaacgtcagtgtggactacaggcacagcgacacgagcacc
acccctctgatggtggcggcggcgcggggcttcatcagtcaggcggagcagctgctcagc
atgggggccagcatctccctcaaggcctccaacggatggactgcacttgactgggcaaag
catttcaaccaggctgaagtggtggatctcctggaggccttcatctcctcccaggaggcc
gggggtaagcaggacgagtcatcgctggtcaagtcgtccagtgcggagctgaacgcagag
gaccaggagctgctgaaggtgtaccaccacagcttcgacgacgagaaggtggacctggac
ctcatcatgcacctgctcttcaacatctgtcagagctcagatgaaggtgcggtgttgatc
ttcttgccgggatatgatgagatcgtcagcctcagggaccgcatcctctacgatgataaa
agatttgccgaccagcctcaaaggtatcaggtgttcactctacactccaacatgcagacc
tccgaccagaagaaggtgctaaagaacacacctgttggtgttcggaaaattatcctgtca
acgaacatcgctgagaccagcattacagtcaacgatgtagtgtttgttattgattctgga
aaagttaaagagaagtcctttgatgccctgaatcatgtgaccatgctgaagatggtgtgg
atctctaaggccagtgcgacacagaggaagggaagagcggggcgctgtagacctggcatc
tgcttccacctgttcagccgcctgcgcttcgacaacatgctggagcaccaggtgccgcag
ctactgagaatgcctctacaggagctgtgcctgcacactaagctgttggcccccatcact
tgccccatagcggagttcctctccagagcccccgagcccccacacactctcagcgtcaaa
aacgcagtgcagatgctcaagacgatcgacgccatggacccatgggaggacctgacggag
ctgggctaccacctggccgacctacccgtggagccgcacctgggcaagatggtgctctgt
gcggtggtgctcaagtgcctggaccccatcctgaccatcgcctgcacactggcgcaccgc
gaccccttcgtgctgcccagccaggcctcgcagaagagagctgccatgctctgccgcaag
cgcttcaccgctggcaccttcagcgaccatatggccctgcttagggcatttcaggcgtgg
cagaaggctcgtagtgacggctgggagcgctccttctgtgagaagaacttcctgtctcag
gccaccatggagatcatcattggcatgaggacacagctactgggacagctcagggccata
ggttttgtacgtgcgcgaggtggcggagacatccgtgacgtgaacctgaactctgagaac
tgggcggtggtcaaggcggcgctggtggcgggcatgtaccccaacctgctgcacgtggac
cgtgagagcgccgcccttatgggcgccaaggagaagagggtccgcttccaccccacctcc
atcctcagccagccgcagttcaagaagatgcctccagccaatgggcaggtggcggcggtg
caatctctgcccactgattggctgatttatgatgagatgacgcgcgcccaccggatcgcc
agcgtgcgctgctgttcgaccgtcaccccgctgacagtgggcatctttgggggctgcgcc
aagctgcccagcactgccctacaagagcccacggtgcagagagatgacatgaatgagagt
agtgacagtgagatggaggatcgctccaccgctcacctggctcagatgaagatcgacgac
tggctcaacttcaaactggaccgggagacggctaacctagccttccagctccggcagaag
tggcacggcctattcctgcggcgcatccgcgcaccctccaagccctggtcgcagctggac
gagtccaccctgcgggcactggtgtcggcaatggcggccgaagagcaggcggccggcctg
cagcagcccacgggcatcgggcagcgcccgcgccccatggcctccgatgagccaccccag
ccctcctcctggaggaccgcccagagccgcaggggtccagggggcgaccacgaacctgcc
gacgagcccagcgtctccatagacagacctccaaggtcctgtccgtctccagctatgctc
ccactgaagggcccacgtgagaagggagcgacacactcgaagcgcccagaggaccacata
cccaaagcgggaggcgagagtcccggtaccagcccaacatctacgtcctcaggaaagtgc
tcaaagtcctccagtccgcgtaccgtgtcgtcggtgcgctacttcatcatgaagagcagc
aacctgcgcaacatcgagctctcccagcagaggggcatctggtccaccacgcccagcaac
gagctcaagctcaaccgcgccttccaagacagcagcctcgtcttcctcgtcttctctgtc
caaggctctggacatttccagggctatgccaggatggtatcggagattggtcaggagcgg
tgccaggactggggctcatcagggctgggaggcgtgttcagcgtggagtggatccgcaaa
gagagcctgcccttccagtgcacgtaccagctccttaacccctggaacgacaacaagaag
gtgcaaatcagccgtgatggacaggagttggagcctcaagctggagctcagctgttgaag
ctgtgggaacgtctctaa
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integrated database retrieval system
