Alosa sapidissima (American shad): 121680079
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Entry
121680079 CDS
T11137
Symbol
sec16a
Name
(RefSeq) protein transport protein Sec16A isoform X1
KO
K20353
COPII coat assembly protein SEC16
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
asad04131
]
121680079 (sec16a)
Membrane trafficking [BR:
asad04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
121680079 (sec16a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
DIM1
Motif
Other DBs
NCBI-GeneID:
121680079
NCBI-ProteinID:
XP_041915185
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All DBs
Position
13:30197361..30216496
Genome browser
AA seq
2186 aa
AA seq
DB search
MQPPPRKTPPNAVGGPPPTSGPNAFRRNRPHKHGAAAAAAAAAASASMATAPPTQPMTDP
FAFGRQAMPPMASNTPPPSSNHLPMQPPNAAAFTQNSLLLQSAPPSASGVSVFTPQPPPT
EQAYFNSREPPAYVSHNSPPDPPQAASPPMQSGPFQPQASQPSPWMYDHGSRPPSVQNYF
QPTSDHSQPFPPPPPGPSPHMHQQNMGLPVHFLPQHQNSASFEAQGYLSQPLPQAEAVPY
SQPSDTGTLGMFFRSNDVENIETPSGDAQVNGVSHLPHAPEPVQLGAAAGATAGAQFDTV
ENLECVPNLEVLPNEPLPHPYETGPNLETPDQVPRPARSASVSSCHSNVSHHSGRHQSGV
MGTFIQQESARPLDTGASPSAGYFEQIDSAPSGEACAFPTPSPPKPVGVFQSSANSSFEP
VRSHSTHPVAQMQPVADRARVVMERSDSITTAVAPTDTLPGNLEQPPDDQETQFLPGSVA
VVAGDRGQPGLNRPAPRRLCDSPATTLWAPNNSANLSGNILLAPAAPPLAVSLVTAAPAE
VIQPPEDGPLDLQHANRQPAQPPPPPPSENLENPPDHGLLSLAPQASLGYASLLVSTPPA
EALNQSVLIAPPSSNYSVIPPAQGLAYAYPNSLAEMPLPARPPSLANPQSPLAANQPPIF
PQGSRNFPPNQSPLNLALETKEAAKPLPLVNNNQSLRGDSQSTPPVNSQALPSSSAANQN
QPSNYALLDFSMHQSLSSNQAPTPPQPQLPNPAAQVGNAPGSGFYLQVTKDAQQGTQGEG
DGFAITERGAHPPSVPMGVAQPAPTLPAAAAQQPPLPRTTSATAIATAMPSAVPAGVPAA
VPTPTPEPAPTMPPPAMPPPAAPPGGPAPLPPPYGDPARPPSVAGGVPSYGPPHPQAQPM
PGPGGYYGAGYPEYYDGRGQYPVPAYPMHDPRAQPYQQDDPYRRADPRYGRYEAERQPER
PSSRSSQYSERSHSSRQGYEEYQAPPPRNAQDEYYAEYYKKQQYDYERSRWYDPNAAYDP
RYRGYYDQASYNWYNYNPEAYRRGENYNYNYGQQYLNSSKREGYDDPWRYYPGYDTSFEE
DYRRQRDPYGDEFDRRSVGSERSSHSVHSHSSRAQSRRNSFSSHSQQSQVYRSQPDLVAA
TYDPTMSGLPLDYSSYSQYPTQQDTQQYTDTNSWPSIEQPPPRPLTPEKYSVPHRCARFG
AAGQLIIVQPNMPSAGQPALIEVHNMETLMQDSPEQTELRAFPGPLIKEETHKVDVIKFA
QNKAMECMRSDNLIDKYSACLIWEFITLMCRQNGTVVGTDIADLLLREHRSVWLPGKSPN
EANLIDFTNEALEQPEEAEQGALSLISDTFMSVPENIGKETERFRELLLFGRKKDALESA
MKNGLWGHALLLASKMDSRTHARVMTRFANSLPINDPLQTVYQLMSGRMPAAATCCGDEK
WGDWRPHLAMVLSNLTHTVDLDMRTIATMGDTLSSKGLVDAAHFCYLMAQVGLGVFTKKS
TKIVLIGSNHSLPFEKFCSSEAIQRTEAYEYAQSLGSQPLCLPNFQVFKFIYACRLAETG
LCAQAFHYCEVISRALLTQSHYHSVEFIGQLIEMSARLRFYDPQLKEKPEQELFLEPDWL
LHLRQLDRQIQGGEITFRDRGTPQLYPCSSPSSEEPPTPPNASTHTPDSSNPLMATLMPG
APVPAVQLMPPAPATILQEGAPSVAQSPDAGGFYPTVPTPAVPMPAVPMFSTTYQPDSNS
PHAGPPLTNSEQMTPQIPGQVPGQMAPPMPGHMPGQMPGHMPGQVPGQMPGQMPGQMPGQ
HPPQMPGQMPPQMQGQMSQPMPGQMPGYMPGQMPGQMSHPMPGQMPPQMPGEGHAPPSPQ
MPPSQPPQMDFFDHMAHLGTGRRSRTTSQSSMHMGPGRRSRTTSESSNHSTGRERSSSLV
NQGSPPPPPIPEAPPAQEASKKNKKESPKKGGGWFTWLYSKKNEAHLPDDKHKSIVWDEK
KQKWVNQDEPEEEYKPPPPPPSSFPKMAPAAGPGPGPGPGPGARPGSGPPVNMFSRRAGT
KSRYVDVLNPGRGGVGGAPAPMPAPMPADLFAPLAPMPIPPNLFTPNAAEEPQPAEGNTA
DGVNQSQPQMFNPTLLPQCPEGSQSGELSRSSSMSSLSREVSQHLNQQAPPAGGVTFYNP
AQFAQAPVPTRVGGRLGGQREYPTLK
NT seq
6561 nt
NT seq
+upstream
nt +downstream
nt
atgcagccccctcctcgcaaaacccctccaaatgcagttggaggccctccacccacgtcc
gggcccaacgccttccggaggaaccgcccccacaaacatggggctgctgctgctgctgct
gctgctgctgcctctgcctccatggcaacggcaccacctacccaaccaatgactgatccg
tttgcctttgggagacaagccatgcctcccatggccagtaatactccacctcccagcagc
aaccaccttccaatgcagcccccaaatgcagcagcctttacccagaattccctgctgttg
cagtctgctccaccttccgcctcgggcgttagcgtgttcaccccgcagccgccccccact
gagcaagcctacttcaactcccgcgagcctcccgcctacgtttcccacaattcccctcca
gatcctccccaggcagcctcgccccccatgcaaagtggcccgtttcagccacaggcctct
cagccttcgccctggatgtatgaccacggaagccgtcctccgtctgtacagaactacttc
cagccgaccagtgaccactcgcagcctttcccgccgcctccccctggcccctcgccacac
atgcatcagcagaacatgggcctgcctgtacactttctcccgcagcaccagaactccgcg
tcttttgaggcccagggctatttaagccaaccccttccccaggccgaggccgtgccctac
agccaaccctctgacaccggaaccctgggcatgttctttcgcagcaatgatgtggagaac
atcgagacgccgtctggagacgcgcaggtcaacggggtctctcacctgccacacgctccg
gagccggtccagctcggggctgccgccggcgcgacggcaggcgcccagttcgacaccgtg
gagaacttggagtgcgtcccgaacctggaggtgcttccgaacgagcccctgccgcacccg
tacgagaccggacccaacctggagaccccggatcaggtcccacggcctgcgcgctccgct
agcgtctcgtcgtgccacagcaacgtcagccaccacagcgggcgccaccagagtggcgtc
atgggcaccttcatccagcaggagagcgcccggcccctggatactggggcatcgccctcg
gccgggtatttcgagcagatcgactcggccccctccggtgaggcgtgcgccttccccacc
ccgagcccgcccaagccagtgggagtgttccagtcgagcgccaactcctcgttcgagcct
gtgcgctcgcactcgacacacccggtcgcgcagatgcagccggtggccgaccgcgcacgc
gtagtgatggagaggtcagacagtatcaccaccgctgtcgcccccaccgacacgctgccg
ggcaaccttgagcagccgccggacgaccaggagacccagttcctgcccgggagtgtcgcc
gtggtggccggggatcgcggccagccagggctgaacagaccggcgccgagacgcctgtgc
gacagtcccgccaccacgctctgggcgcccaacaactcggccaacctcagtgggaacatc
ctgctggcccccgccgcccctcccttagccgtctcgttggtcactgcggcgccagccgag
gtcatccagccccccgaggacggtcccctggacctgcagcacgccaaccgacagccggca
cagccgccaccaccaccaccctcggagaacctggagaacccgcctgatcatggccttctg
agcctggccccccaggcaagtctgggctacgcttcgctgctcgtgtccactccccctgcc
gaggcgctgaaccaatctgtgctgatcgcaccaccttcctccaattacagtgtgattccc
ccggcgcaaggcctggcctacgcttaccccaacagcttagcggagatgcctctgccggca
cgcccaccatctctggccaatccacagtcgcctctcgcagccaatcagccgccgattttc
cctcaaggttccagaaatttcccccctaatcagagtccactgaacttggcgctagagacc
aaggaagctgccaagcccctccctctggtcaacaacaaccagtcactgcgaggggacagt
caatccacaccacctgttaattcccaagctttaccttcttcctctgcagccaatcagaat
cagccttcaaattacgcactacttgatttctctatgcaccaatcgctaagctccaatcag
gcaccgactccgccccagccgcagctgcccaatccagcagcacaggtgggtaacgccccc
ggttccggtttctacctgcaggttaccaaagatgcccagcagggcacgcagggagagggc
gatggttttgccatcactgagcgtggcgcccatccacccagcgtgcccatgggtgttgcc
cagccagcgcccacgctgccggcagctgccgcccagcagcctcccctgccacggacaacc
tcagccacagccatcgccacagccatgccctcagcagtgcctgcaggggtgcccgcggct
gtgcccacacctaccccagagccagctccgactatgcctccacctgctatgcctccacct
gctgcccctcctggaggtcctgctcccctgcccccaccctatggcgacccggctcgtcct
ccgtcggtggcaggtggcgtcccttcttacgggccaccccatccacaggctcaacccatg
cccggccccggaggatactacggcgcaggctacccagagtactacgacggcagaggacag
tatcctgtgccggcctatccgatgcatgaccccagagcccagccatatcagcaggatgac
ccatatcgcagggctgacccacggtacggccgctatgaggcagagaggcaacccgagaga
cccagctcccgctccagccagtactccgagaggtcccactccagcaggcagggctatgaa
gaataccaggccccccctcctaggaatgcccaagatgaatactatgccgagtactacaag
aagcagcagtatgattatgaacggagtcgttggtatgatccaaatgctgcctatgaccct
cgctacagaggatactatgatcaggcatcgtacaactggtacaattacaaccctgaggcc
tatcgcaggggagaaaactacaactacaactatggtcaacagtacctgaacagcagtaaa
cgtgagggctatgacgacccgtggcgttactaccccggttatgacaccagcttcgaggaa
gactaccggcggcagcgcgacccctatggtgacgagtttgaccggcggagcgttggcagt
gagcgctcctcgcacagtgtccactcgcacagctcgcgcgcacagagccgcaggaacagc
ttcagctcacactcacagcagagtcaggtgtacaggagccagcctgacctggttgcggcg
acctatgaccccaccatgtctggcctgcccctggattactccagctacagtcagtatccc
acacagcaggatacgcagcagtacaccgacacaaacagctggccctccattgagcaacca
cccccacgacccctgacaccagagaagtactctgttccccaccgctgtgcgcggtttggt
gctgccggtcaactgatcatagtccagcccaacatgccttcggctggccagccggccctc
attgaagtgcacaacatggagacgctgatgcaggattctccggagcagacagagctgcgt
gcattccccggacctctcatcaaggaggagacgcataaagtggatgttatcaagtttgcc
caaaacaaggccatggagtgcatgcgcagtgataaccttattgacaagtattccgcctgc
cttatctgggagttcatcaccttgatgtgccgacaaaatgggaccgttgtgggcacagac
attgctgacctcctgcttcgcgagcaccgctcggtgtggctgcccggcaagtctcccaac
gaggccaacctgatcgacttcaccaacgaagccctggagcagcctgaggaggcggagcag
ggcgcactctccctcatctccgacacctttatgagtgtgcctgaaaacatcggcaaggag
acggagcgcttccgcgagctgctgctgttcggacgcaaaaaggatgccctggagtcagcc
atgaagaacggtttgtggggtcatgctttgctgttggccagtaagatggacagcaggact
cacgccagagtcatgaccaggtttgccaacagtttacccatcaatgacccacttcagact
gtttaccagctcatgtctggtaggatgccagctgcagctacatgttgcggtgatgagaag
tggggcgactggcgcccccacttggccatggtgctgtccaacctcacccacacggtggac
ctggacatgcgcaccatcgccaccatgggcgacacgctgtcctccaagggactggtggat
gcggctcacttctgctacctgatggctcaggtggggctgggagtgttcaccaagaagagc
accaagatcgtgctgattggctccaaccacagcttgccgtttgagaagttctgctcgtcc
gaggccatccagcgcacggaggcgtacgagtatgcccagtccctgggctctcagccactc
tgcctgcccaacttccaggtgttcaagttcatctatgcgtgccgccttgctgagactggg
ctctgtgcccaggctttccattactgcgaggtcatcagccgagctctgctgacacagtca
cactaccactcagtggagttcatcggccagctcatagagatgtctgctcggctgcggttc
tatgaccctcagctgaaggagaagcccgagcaggagctcttcctagagccggactggctg
ctgcacctgcggcagctggacagacagatccagggaggggagatcacgttcagggaccgg
gggacgccccagctctacccctgctcctcccccagctctgaggagccccctaccccgcct
aacgcatccacccacacccccgactcctccaacccgctgatggccactctcatgcccggg
gctccagtgcctgctgtccagctcatgccaccagcgccagcaaccattctgcaggaaggt
gcgccctctgtagcccagagccccgacgcaggcggcttctatccgaccgtgcccacgcca
gccgtgcccatgccagccgtgcccatgttctccaccacctaccagccagacagcaactca
ccacacgctggacccccactaacaaactctgagcagatgactcctcagatacccggtcaa
gtacctggtcaaatggcccctcctatgccagggcacatgccagggcagatgccaggccac
atgccgggtcaggtgccgggtcagatgccgggtcaaatgccaggccaaatgccaggacaa
catccccctcagatgcccgggcagatgccgcctcaaatgcaggggcagatgtctcagcct
atgcctgggcaaatgccaggatacatgcctgggcaaatgccagggcagatgtctcatcct
atgcccggtcagatgcctccacagatgcctggagaagggcatgctccaccctctcctcag
atgcctccctcacagcctccccagatggacttcttcgaccacatggctcacctgggtacg
ggcaggagatccaggaccacctcgcagtcttctatgcatatggggccaggccgtcgttcg
cggacaacatccgagtcgtccaaccactcgaccggacgtgagcgaagcagctcattggtt
aaccagggctctccccccccaccccctatcccagaggcgccgcctgcacaggaagcttct
aagaaaaacaagaaagagtcaccaaaaaagggcggtggatggttcacttggctttactca
aagaagaatgaagcccacctccctgatgacaaacataaatctatcgtctgggacgagaaa
aagcagaaatgggtgaatcaggatgagccggaggaggagtataagccccctcctccaccg
ccatccagttttcccaagatggctccagccgcagggcctggtcctggacctggtcccggt
cctggcgccagaccaggctctgggccaccggtcaacatgttctccaggagagctggcacc
aagagccgctatgtggacgtgttgaacccaggcagagggggtgttggtggtgcgcctgct
cccatgcctgctcctatgccggctgaccttttcgctcctcttgcccctatgcccatacca
cccaacctatttaccccaaatgcagctgaagaaccacagccagcagagggaaacacagct
gatggtgtgaaccagagtcagcctcagatgtttaatcccactctgctgcctcagtgtcca
gagggatctcagtctggggagctgtccagatctagttcaatgagttctttatcacgtgaa
gtgagtcagcacttaaatcagcaggccccaccagctggaggcgttaccttctataacccc
gcccaatttgcacaggctccagtgcccacgcgtgtcgggggacgcctgggtggacagaga
gagtaccccaccctcaagtga
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integrated database retrieval system
