Alosa sapidissima (American shad): 121680156
Help
Entry
121680156 CDS
T11137
Symbol
rad23b
Name
(RefSeq) UV excision repair protein RAD23 homolog B
KO
K10839
UV excision repair protein RAD23
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03420
Nucleotide excision repair
asad04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121680156 (rad23b)
09124 Replication and repair
03420 Nucleotide excision repair
121680156 (rad23b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
asad03051
]
121680156 (rad23b)
03400 DNA repair and recombination proteins [BR:
asad03400
]
121680156 (rad23b)
Proteasome [BR:
asad03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
121680156 (rad23b)
DNA repair and recombination proteins [BR:
asad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
121680156 (rad23b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPC-binding
UBA
ubiquitin
UBA_7
Rad60-SLD
Crinkler
Rad60-SLD_2
UBA_3
Dsc3_N
CUE
Ubiquitin_5
Ubiquitin_4
Motif
Other DBs
NCBI-GeneID:
121680156
NCBI-ProteinID:
XP_041915309
LinkDB
All DBs
Position
13:3194333..3217179
Genome browser
AA seq
379 aa
AA seq
DB search
MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKECFPVAGQKLIYAGKILNDDTALK
EYKIDEKNFVVVMVAKPKAAPAVAQPSTATTTTTSSSTTASTTPSSAGATAPENPPESAS
KEDKPADEKPPTSAAPASTPTRSSANVNIFEEATSALVTGQSYENMVTEMMLMGYEREQV
VAALRASFNNPDRAVEYLLTGIPVGEGESNTGAEQVSPAGGGAPAVSTGALTSPTSTAPS
QPVAASGANPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFI
QMLNEPAQEGGQGGGGGVAEAGGGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE
KNENLAANFLLQQNFDDID
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcacattgaaaaccctgcaacagcaaacttttaaaatcgacattgacgcagaa
gaaacggtaaaggccttaaaggaaaaaatagagaatgagaagggaaaggaatgttttcca
gttgcaggacagaagttgatatatgcaggcaaaatccttaacgatgacacagctctgaag
gaatataaaatagatgagaaaaactttgtggttgtcatggtagcaaagcctaaagcagct
cctgctgtagctcagccttccactgctacaacaaccacaactagctccagcactacagcc
tctactaccccctctagtgcaggggcaacagctcccgagaaccccccggagagtgcgtcc
aaggaggacaagcctgcagatgagaagcctcccaccagtgctgcacctgcctccacacct
acccgatcttcagcaaatgttaatatatttgaagaagcaacatctgcattggtgaccggc
cagtcatatgagaacatggtgaccgagatgatgctaatgggctatgagagagagcaagtg
gttgctgcactaagggccagctttaataacccagacagagctgtggagtacctgcttacg
ggcatcccagtgggggagggggagagtaatactggtgctgagcaggtcagtcctgctggg
gggggcgccccagctgtctccactggagcccttacttcccctacaagcacagctccttca
cagcccgtggctgcatctggagccaatccccttgaattcctgaggaaccagccccagttt
caacagatgcggcagatcatccagcagaacccctcactgctaccagctctcctgcaacag
ataggcagggagaaccctcagcttctgcagcaaatcagcagccatcaggagcagttcatc
cagatgcttaatgaaccggcccaagagggagggcaagggggtggtggaggcgtggcagag
gctggcggaggtcatatgaactacatccaggttacgccacaggagaaagaagccattgag
aggctaaaggccttgggattcccagaaggacttgttatacaggcatactttgcttgtgag
aagaatgagaacttggctgcaaacttccttttacaacagaactttgatgatattgactaa
DBGET
integrated database retrieval system
