Alosa sapidissima (American shad): 121680242
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Entry
121680242 CDS
T11137
Symbol
rapgef1b
Name
(RefSeq) rap guanine nucleotide exchange factor 1b isoform X1
KO
K06277
Rap guanine nucleotide exchange factor 1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04510
Focal adhesion
asad04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121680242 (rapgef1b)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
121680242 (rapgef1b)
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Gene cluster
GFIT
Motif
Pfam:
RasGEF
RasGEF_N
Motif
Other DBs
NCBI-GeneID:
121680242
NCBI-ProteinID:
XP_041915414
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Position
13:4118644..4152368
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AA seq
1197 aa
AA seq
DB search
MSGNIENKQEGPRSHLSSLKLSTMKLMDKFHSPKIKRTPSTKGKPPSPEPPAPAPEKPVN
KKVSRLEEQEKDVVSALRYFKAIVDKMAVDAKVLEMLPGSASKVLEAILPLVQGDTRSHN
SSALSSCHNRVYQSLANLVRWSDDVMLKGIDLSDKETVTTVTTVIKAVLDGVKELVKLTI
EKQEQPSPTSPKPAPPMAKAESMCHVPERDMNKTTPVTTPSESLTNMSEEEAPPKPPLPG
PKLAEHRARMQMAAQLAVARQRRAAQTENAPILPPKKRESLPALTRIAVVAPMSRAASGR
SLPPGAFKQLQQQDQEAELLQRRLSADSQSYSSDSPCLSSCGIMGKLSQSDEQLSALERD
SGQCSRNTSCETLDGYDPDYDFLHQDLSVLESLPPFPVPGDGGGGGGSLSPLPECLSECG
SPPPVPPPLPPLPPSLRSSSSSGAIIPPPALPLKKRRSVPVLSVHGLRLAPQFYHSQSEE
WEGGPDRPPTPPFPLLTPLSPMPLLNGGVFTSQYTHSPGSSGDGGCPLTDSPPPLPEKKS
RTIMQYMAFVEDYSEPQPSVFYQTPASESIYKHRLRRLQEVYGISESYAGEQTPTQGHTQ
GHTQGHTQGHTQGHARPSPPPALPPKQRQMVSQLSSSSLCSRPLPTPGLPEGACPVLTHS
LSLSSSLCGHTSLTTPLNTQPAGLANLSVTSEGVGWSTASLAGSLASLPACHPSDSSLTD
SLLTSASESAIDEGGEGEYVNLYSNGNDTSHSAPVSLIGDVLPTPRTSSSSSRGTLTKER
PVDLSEDVDELSLIDHKDIMSRITCKQENDDGPDVRAGSVDILLVHATETDRKDLVLYCE
AFLTTYRTFITPEELIKKLHYRYTRFCHSPDTFKKRVSKNTFFVLVRVVDELCLVELTED
ILHQLMELVFQLLCNGELSLARVLRSNILDKVDQKRLQRHIHTHAPLSTRMVSARPGTLH
DFRSHEVADQLTLLDAELFYKIEIPEVLLWAKEQNEEKSPNLTQFTEHFNNMSYWVRSII
IQQERAQDREKLLLKFIKIMKHLRKLNNFNSYLAILSALDSAPIRRLEWQKQTSEGLEEY
CTLIDSSSSFRAYRAALAEVEPPCIPYLGLILQDLTFVHLGNPDLVEGKVNFSKRWQQFN
ILDSMRRFQQVNYELKRNDDIISFFNDFTDHLAEEALWELSLKIKPRGKKMPREEKT
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcaatatagagaacaagcaagaggggccgcgctcccacctctcctccctcaag
ctatccaccatgaagctcatggacaagttccactcccccaagatcaaacgcacgccgtcc
accaaaggcaagcccccctccccagaacccccagctcccgccccagagaaaccagtcaac
aagaaggtgtctcgtctggaggagcaggagaaggatgtggtaagtgcgttgcgctacttc
aaggccatcgtggacaagatggccgtggatgccaaagttctggagatgctccctggctcg
gccagcaaagttctggaggccatcttaccgctggtgcagggggacactcgctcacacaac
agttcggcgctgtcctcctgtcataaccgtgtgtatcagagtctggctaacctggtgcgc
tggtccgatgatgtcatgttgaaggggattgacctgagtgacaaggagactgtgacaacg
gtcaccacggtgattaaagctgtgctcgatggtgtgaaggagctggtaaaactcaccatt
gagaaacaggaacagccttcacccacatcccctaaacctgcacctccaatggctaaagca
gagagcatgtgtcatgtgcctgagcgagacatgaacaagaccacacctgtgaccacgccc
tctgagagcttgacgaacatgtcagaggaggaggctccacccaaaccccccctccctggt
cctaaactggctgaacacagggccagaatgcagatggctgcacagctggcagtcgctagg
caacggagagccgctcagacagaaaatgccccgattctgccccctaagaagcgtgagtca
ttgcccgcgctcacacgcatcgccgtggtggcacccatgagccgagctgccagcggtagg
agtttaccgcccggagccttcaaacagttacaacagcaggaccaagaggcggagctactg
cagagacgcttatcggcagacagccaatcgtacagcagcgactccccgtgcctgtcatcc
tgcggcatcatgggtaaactgagccagtcagacgagcagctctctgcgctagagagggac
agtgggcagtgctcccgaaacaccagctgtgaaacgctggatggttacgatcccgactac
gacttcctgcatcaggacctgtccgtgctggagtcgctgcctcccttccccgtgccgggc
gacggtggcggtggtggcggttccctgagccccctccccgagtgcctgagcgagtgcggc
tcgccccctccggtccctccgcccctgccgcccctgcccccctccctccgcagctcctcg
tcctcgggcgccatcatcccgccgccggcgctgccgctgaagaagcggcgcagcgtgccg
gtcctctccgtgcacgggctccgcttggcgccgcagttctaccacagccagtcggaggag
tgggaaggcgggccggacaggccgcccacgccccccttccccctgctcacgccgctgtcg
cccatgcccctgctcaacggcggcgtgttcaccagccagtacacacactcgccgggcagc
agcggagacggaggctgcccgctcacggacagtccaccgccactaccggagaagaagagc
cggacgatcatgcagtacatggcgtttgtggaggactactcggagccgcagccgtccgtc
ttctaccagacgccggccagcgagagcatctacaagcaccgtctgcgccgcctgcaggag
gtgtacggcatcagcgagagctacgccggggagcagacacccacgcaggggcacacgcag
gggcacacgcaggggcacacgcaggggcacacacaggggcacgcacggccctcgccacca
cccgccctgccgcccaaacagaggcaaatggtctctcagctttcttcctcctccctttgc
tctcgtccccttcctactcctggtcttccagagggggcgtgtcctgtgctcactcacagc
ctatcactctctagctccctctgtggccacacctctttgaccacacccctgaacacacaa
ccagctgggctggccaatctcagcgtaacctcggagggcgtgggctggtccacggcctct
ctggccggctctttggcctctctgcctgcctgtcatccctctgacagctctctcactgac
tctctacttacctctgcgagtgaaagcgcaattgatgagggaggagagggggaatatgtc
aacctgtactcgaatggaaatgacacatcccactcagcaccagtgagcctaataggtgat
gttcttccaaccccgagaacatcctcatctagtagcagagggacactgaccaaagagagg
cctgtggacttgtcggaggatgtcgatgaactctcccttattgaccacaaagacatcatg
agccgcatcacatgcaaacaagagaatgatgacgggccagatgtaagggctggctcggtt
gacatattgttagtccacgccacagagactgaccgcaaagatctggttttatactgtgag
gcgtttctgaccacatacagaaccttcatcacgccagaggaactcatcaagaaactacac
tacagatatacccgcttctgccacagtcctgacacctttaagaaacgcgtcagtaagaac
actttcttcgtgctggtgcgtgtcgtagatgagctgtgtctggtggagctaacggaggac
atcctgcatcagctaatggagctggtgttccagctgctgtgtaacggcgagctgagtctg
gcacgcgtgctgcgctccaacatcctggacaaggtggaccagaagaggctgcagaggcac
atccacacccacgcaccactgtccacacgcatggtctccgccaggccaggcactctccat
gatttccgaagtcatgaagttgctgatcagctcactcttctggatgcagagctcttttat
aagattgagatccccgaggttcttctttgggcgaaggagcagaatgaggagaagagcccg
aacctgacccagttcacagagcacttcaacaacatgagctactgggtgcgctccatcatt
atacagcaggaaagagcacaggacagggagaaacttctgctcaaattcatcaagatcatg
aagcacttacggaagctgaacaacttcaactcgtacctggccatcctgtcggctctggac
tctgcaccaatcagacgtctcgaatggcagaaacagacctctgagggattagaggagtac
tgtacattgattgacagctcctcatcattccgagcgtaccgtgcagctctggctgaagta
gagcctccctgcattccctaccttgggctcattctccaggacttgacctttgttcacctg
ggcaaccctgacctggtcgaagggaaggtcaacttctcaaagcgctggcagcagttcaac
attctagacagcatgagacgctttcagcaagttaattacgagctgaagcggaatgatgac
atcatctcatttttcaacgacttcacggaccacctggctgaggaggcattatgggagctc
tcgctgaagatcaagccccgcggcaagaagatgccccgtgaggagaagacctag
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