Alosa sapidissima (American shad): 121680280
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Entry
121680280 CDS
T11137
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121680280 (rc3h2)
04121 Ubiquitin system [BR:
asad04121
]
121680280 (rc3h2)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
121680280 (rc3h2)
Ubiquitin system [BR:
asad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121680280 (rc3h2)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
121680280
NCBI-ProteinID:
XP_041915445
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Position
13:complement(16720240..16751199)
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AA seq
1137 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDGSSHKPISLGCSHTVCKTCLHKLHRKACPFDQTAISTD
IDLLPVNRALLQLVGAQVPDGPNVSLSSAVDSEHYEVCRACVEELALYLKPISGGKGVAT
LSPSALSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNSLRPHLELLANI
DHNADAAPPTWEELESVMLAVKVVVHGLVEFIQNFSKKSHETPQPQPNSKYKTSMCRDLR
QQGGCPRGSNCTFAHTQDELENPLSSLPRYRMRNKKLSGASRPFLLPQGVMGKAPNCKGG
IQTGEPSLGCLKGPEKDTQAPDGHSPTQLIPRGADALDDLKRTLPNGANTLSQSSSINLE
QKTVSPPKTPVSQTQALLLSPNATAHEMGGGASPKSAHFLLRGHPELYYQDQRSPTCDVP
PFQTASNYYTSSGLPSKPCVARFLRSGNVAESSYPPTSPYTDQPSLLATRERLGPSYGQP
PPPQTPPAACGSLSPGHGHAHGHGHAHGVYAPVYDSRRAWRPQLYQREDGRSNSLPPEVL
HSPACQPPPTRERYNSLDSPYCGSMDHRAALHRTHRPAVCSQDSYARAPLGYEDMIHRKQ
EQWAHHHNNVSRPSQSSPVFAVDFCAEQQQHADSVGGACVSCKLRAEESLAHYSPWSCGS
ISPFDSEPYASSMYNSCSQHMQDVESGTGKRWLHMFEPYRRLKEEDPIIPFGEGPIISKW
GAISRASRTGYHTTDPVQATASQGSVNTTPVNFRDYSPHIGHGDYRWGPRGSDSSSHSSF
LESDQLGVAELQARRPSLIGGEKLGMDLLHAETSPYCAESEPDRDIELELSALDLEDNEP
HQNPMQDHRHVLLGRFKLICLKHTACSSRQEPLEVRVPPQSSHLPPPSTEPQPQKLSPDG
MDHHLLKKMAFRKALSPGGLGSGRLGIGKLMMKTGPPSRSDSPHSSTTGPEVLLNGS
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcaggcggcccagtggacagagttcctgtcctgccccatctgctacaatgag
tttgacggcagcagccacaagcccatcagcctgggctgctcgcacaccgtctgcaaaacg
tgcctacacaagctgcaccgcaaggcctgccccttcgaccagaccgccatcagcaccgac
atcgacctgctgcccgtcaacagagccctgctgcagctcgtcggtgcacaggtccctgat
ggtccaaacgtgtccttgagcagtgcagtggacagtgagcactatgaagtgtgcagggcc
tgtgtggaggaactggccctctacctgaaacccatcagtggaggtaaaggcgtggcgacg
ctgagcccgagtgccctcagccggcccatgcagcggaagctggtgacgctggtcaactgc
cagctggtggaggaggagggtcgcgttcgggccgtacgggccggccgctccctgggtgag
cgcaccgtcaccgagctcatccttcagcaccagaaccctcagcagctctccgccaacctg
tgggccgccgtccgcgcccgcgggtgccagttcctcggaccagccatgcaggaggacgct
ctgaagctggttctgctggccttggaggatggctcggctctgtcccggaaggttctggtt
ctgtttgtggtccagaagctggaggctcgcttcccccaggcgtccaagaccagcatcggc
catgttgtgcagctcctctaccgggcctcctgttttaaggttaccaagcgggatgaggac
tcgtcgctcatgcagctgaaggaggagttccgcacctacgaggcacttcgacgtgaacat
gacgcccagatcgtccacatcgccatggaggccgggctccgcatctcccccgagcagtgg
tcctcgctgctgtatggagacctggttcacaagtcccacatgcagtccattatcgacaag
ctgcagtcgcccgagtcgtttgcaaagagtgtccaggagctgacgatcgtgctgcagagg
acgggggacccggccaacctgaacagcctgagaccacacctggaactcctggccaacata
gaccacaatgcagatgctgcacctccaacctgggaggagttggagagtgtaatgttggct
gtgaaagtagtagtccatggactggtagagttcatccagaacttcagcaagaaaagtcac
gaaacgccccagccacagccgaacagcaagtacaagactagcatgtgcagagacctacgg
cagcaggggggctgcccacgagggtccaactgcacttttgcccatactcaggacgaacta
gagaatcctctctcctctttgcccaggtacagaatgaggaacaagaagctcagtggggcc
tcccgccccttcctgctcccccagggggttatgggtaaagcgcccaactgtaaggggggt
atccagacgggcgagccctctctggggtgtctgaagggcccagagaaggacacgcaggcc
cctgacggccactcgcccacgcagctcatcccccgcggtgcagatgcactggatgacctg
aagaggacgctacccaatggtgccaacacactctcacagtcctcctccattaacctagag
caaaagactgtttcacctccaaagacgcccgtcagccagactcaagccttactcttgtct
cccaacgccacagcccatgagatgggcggcggggcctctcccaagtctgcccacttcctg
ttgaggggacaccccgagctctactaccaggaccagcggtcccctacgtgtgacgtgccc
cccttccagacagccagtaattactatacgtcctccggcctcccctccaaaccctgtgtg
gctcgtttcctgcgctctggcaacgtagccgagtcctcctatcccccaacgtcgccgtac
accgaccagccatctctgttggccacgcgggagcgtcttggcccttcatatggccagccg
ccgccgccgcaaacaccaccggcagcgtgcggctcccttagccccggccacgggcacgct
catggccacgggcacgctcacggcgtctacgcgcccgtctacgacagtaggcgggcgtgg
cggccgcagctgtaccagagggaggatggccggagcaactcactgccacccgaggtgctg
cactcgcccgcctgccagcctcctcccaccagggagcgctataactcactggacagccct
tactgcggctccatggatcacagggccgcactgcacaggactcaccgtcccgctgtctgc
tctcaggactcatatgcacgcgcacctctcggctacgaggacatgatccaccgtaaacag
gaacagtgggcgcatcaccataacaacgtcagccggccctcccagtcctcacctgtcttt
gctgttgatttttgtgctgagcagcagcagcatgctgatagtgtgggcggtgcgtgtgtg
agctgtaagttgcgtgcggaggagagtctggcccactactcgccctggtcgtgtggctcc
atcagccccttcgactccgagccctatgccagctccatgtacaactcctgctcgcaacac
atgcaggatgtagagagtggcaccggcaagcgctggctgcacatgtttgagccgtaccgc
cgactgaaggaggaggaccccatcatcccgttcggggaaggacccatcatctccaagtgg
ggggccatctcccgcgcctcccggaccggctaccacaccactgacccagtccaagccact
gcctcgcagggcagtgtcaacaccacgcctgtcaactttagagattacagtccccacatt
ggacatggagattacagatggggtccgcgaggttctgactcgtccagccactccagcttc
ttggagagtgaccagttgggcgtggcagagctgcaagcacgccggccctctctgattggt
ggagagaagctggggatggatctccttcatgcagaaacgagtccgtactgtgcagagagt
gaaccagaccgggacatcgagttggaactgtctgccttggacttggaggacaacgagcca
caccagaaccccatgcaggaccacagacatgtgttgctgggcagatttaaactcatctgt
ctaaagcacactgcctgttcctctcggcaggagcccctggaggtgagagtacccccccag
agctctcatctgcccccccccagcactgagccccagccccagaagctctctcccgatggg
atggaccatcacctgctcaagaagatggccttcaggaaggctttgtctccgggaggcctt
ggctctgggaggctgggcatagggaagctgatgatgaagacgggcccaccatcacgctcc
gatagcccccactcctccaccaccgggcctgaggtgctgctgaacggcagctga
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