Alosa sapidissima (American shad): 121680289
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Entry
121680289 CDS
T11137
Symbol
grin1a
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1a isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04020
Calcium signaling pathway
asad04080
Neuroactive ligand-receptor interaction
asad04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
121680289 (grin1a)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121680289 (grin1a)
04082 Neuroactive ligand signaling
121680289 (grin1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
asad04040
]
121680289 (grin1a)
Ion channels [BR:
asad04040
]
Ligand-gated channels
Glutamate (ionotropic)
121680289 (grin1a)
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GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
Motif
Other DBs
NCBI-GeneID:
121680289
NCBI-ProteinID:
XP_041915469
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Position
13:9037997..9067726
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AA seq
1009 aa
AA seq
DB search
MRLFLLAVFFSCSCVRGGCEPKIVNIGAVLSQKRYEQVFKDAVTQANQVYGRDKFKLTAI
SVTHKPNAIQMALSVCEDLISSQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAHVWFDMMREFHWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKKRNYENLDQLSYDNKRGPKAEKVLQFSQETNLTALLLEAKELEARVIILSA
SEEDAASVYKAARFLNMTGSGYVWLVGEREMSGKALSEAPDGLIGLQLINGKNESAHIND
AVAVVAQSIQELFEKENITEPPRGCVGNTNIWKTGPLFKRVLMSSKYPEGLTGRVEFNDD
GDRKFAHYSILNYQKSRLIQVGIYNGTQVVLNKQRKIIWPGGQTDTPRGFQMSTRLKIVT
IHQEPFVYVKPTSLEGTCNEEYTPNGVLIKKVICTGPNETIPGNITGRPIVPQCCYGFCV
DLLIKLAMTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTIN
NERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLL
DRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFA
MIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELS
TMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGI
GMRKDSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLV
AGGIAAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDSKEPSGSQVLGAAATP
SLPSSSVETQDDRKSGRAEPDPKQKASFRSISTSLASSIKRRRASKDTVCEPPAAGRSQL
YECGRFVDAGWEGGRGRQNPNQTTGRGGAQTSSTHPQTSLGSSTCPTRL
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgtttttgctagccgttttcttctcgtgctcctgtgtgcggggcggctgcgaa
ccaaagattgtgaacatcggggccgtcctcagccagaagcggtatgagcaggtgttcaag
gatgcggtcacgcaagctaaccaggtctacggcagggacaaattcaaactgactgcaatc
tctgtcacccacaaacccaatgcgattcaaatggcgctttccgtctgtgaggatctcata
tcaagccaggtgtacgccatcctggtgagtcatcctccacagtccaatgatcacctcacc
ccaacacccgtctcctacacggccggcttctaccgcatccccgtggtgggcctaaccacc
cgcatgtccatctactccgacaagagcatccatctgtccttcttgcgaactgtccccccc
tattcacatcaagcccacgtttggttcgacatgatgcgcgagttccactggaatcacatc
atcctgatcgtcagcgatgaccacgagggtcgagctgcccagaagagactcgagacgctg
ctcgaggagcgtgagaccaagaataaaaaaaggaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggaccaaaggcagagaaagtcctccaattcagccaggagactaac
ttaaccgctctgctgctggaggccaaagaactggaggcacgtgtcatcatcctgtcggcc
agcgaagaggatgctgcttcagtatacaaggctgcacgcttcctgaacatgaccggttct
ggctacgtgtggctggtgggagagcgagagatgtccggtaaagcactgagcgaagcacca
gacggtctcattggcctgcagctgatcaacgggaagaacgagtcggcgcacatcaacgac
gcagtcgctgtggtagcacagtccatccaggagctgtttgagaaggagaacatcacagag
cccccgcggggctgtgtaggcaacaccaacatctggaagaccgggccgctcttcaaaagg
gtgctgatgtcatcaaaatacccagaaggcctcacgggacgtgtggaatttaatgatgat
ggtgacaggaagtttgctcactacagcatcctcaactaccagaagagcagacttattcaa
gtcggcatttacaacgggacccaggtggtgttgaacaagcagaggaagatcatatggccc
ggaggacagacagacacaccaaggggttttcaaatgtcaactcgactaaagatagtgact
atacaccaggagccttttgtgtatgtgaaaccgacaagtctggaaggaacatgcaatgag
gagtatacacctaatggagtcttaataaaaaaggtgatctgcactgggccgaatgagacc
atcccaggtaacatcacaggacgcccaattgtacctcagtgttgctatggtttctgcgtt
gaccttctgattaagctggcaatgaccatgaactttacctatgaggtgcacctagtagca
gatggtaaatttggaacacaggagcgggtgaacaacagcaacaagaaagagtggaatgga
atgatgggtgagctcctgggtggtctggcagacatgattgttgctccgctcacaataaac
aatgaacgagcccagtacatagaattctccaagccatttaagtaccagggccttaccatc
cttgtcaaaaaggaaatccctcgcagtacgctggactcgttcatgcagccctttcagagc
acactgtggctgttggtgggtctatcggtgcatgtggtggcggtgatgctttacctacta
gaccggttcagcccatttggaaggtttaaagtgaatagtgaagaggaagaagaagatgcc
ctcacgttatcgtcagccatgtggttctcatggggagtactactgaattctgggattgga
gaaggtgcaccccgcagcttctccgcgcgaatcctgggcatggtgtgggcaggcttcgcc
atgatcatcgtagcatcgtacactgccaacctggctgccttcctagtgctggatcggcct
gaggagcgcatcaccggcatcaatgacccaaggctgaggaacccgtcagacaagttcatc
tacgccacagtgaaacagagctcggtggacatctactttcggcggcaggtggagcttagc
accatgtaccgccacatggagaagcacaactatgagagcgccgccgaagccatccaggct
gtgcgggacaacaagctgcatgctttcatctgggactctgcggtgctggagtttgaagcc
tcgcagaagtgcgacctggtgaccacgggagagctgtttttccgttcgggctttggcata
ggcatgcgcaaggacagcccttggaaacagaatgtgtccctggcaatcctcagttcccat
gaaaacggcttcatggaggacctagataaaacctgggtgagataccaggagtgtgactct
cggagcaatgcaccagccacactcacctttgagaatatggcaggcgtattcatgttggtg
gctggtggcattgcggcggggatcttcctcatcttcatagagatcgcttacaagcgccac
aaagacgcccgcaggaagcagatgcagctggccttcgcggccgtcaatgtgtggaggaag
aacctgcaggacagtaaggaaccttctggaagtcaagttttgggcgcagctgcaacgcca
tctttaccctcttcctctgtagagacacaggatgatagaaaaagtggtagagcagagccc
gaccccaaacagaaagcctcttttaggtccatcagtacgtccctggcctccagcatcaag
agacgtagggcctccaaagacacggtgtgtgagcctccggccgcgggcaggagtcagttg
tatgagtgtgggagatttgtggatgctgggtgggagggaggtagagggagacaaaaccca
aatcaaaccacagggagaggaggcgcccaaaccagcagtacccacccacagacatcactg
ggcagctcaacctgtccgacccgtctgtga
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