Alosa sapidissima (American shad): 121680339
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Entry
121680339 CDS
T11137
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asad03021
]
121680339
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
121680339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
SR-25
Motif
Other DBs
NCBI-GeneID:
121680339
NCBI-ProteinID:
XP_041915602
LinkDB
All DBs
Position
13:15415014..15510846
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AA seq
2209 aa
AA seq
DB search
MTTAANWVANGASLEDCHSNIFSLAELTGIKWRCYHFRSGGEYGPVISAPAPDDPVLRSY
TRCVQANLLCVWRRKVKPDAKELWIFWWGEEPNLTDVIHHELEVAEEGLWECGLSYECRT
LLFKAIHNLLERCLLDKDFVRIGKWFVKPHELEEKTLGSSEHLSCAFTFFLHGESNVCTS
VEIAQHQPAYHISAQHIHLAQTSSSPVQVILSPYGLCGTLTGQTYKMSEPAVRKLMEEWS
HFYPTVLRRRSPEPERTDQTADLNYDVHGHAAVEVIVGGVRMIYPAAFVLIAQSDLPAEQ
PPSAPGSQGGGRDLSGCGIPLTPPTSPEQPCSGDSGFQTAVSSVNSQEGCMTLSPKHSGK
KLTNQMVHQAWKECYLNQLQRKASLSSSAVSAAAPPVKEPVPSGGAAAAATAAATWDFTS
PGERVACSCSRLKQQKQQQASSASASTTPGANAAPSSTTTSSSSSSSSSSSSATSSSSTP
SSCSLPALPPPAPPPSKHKVADKPDKSDKQAKRPTVTPFHHRVSASQGPTCPDHEAQQGG
PQLGLVPLEPPLEALPGCNKYPPKPLSSMRKGTAESLMHSPISPLPPTLSPHPRGQQDPE
ALDVSASLPQCQDGPMGGPMGGPMEVSETALYAPPLGPRDAGGGGGWWKGYKTPCVERSD
LRPPDLPSAERVESKTDTAAEGMALKRLFTQTHKRFKVSEERVKEHISMLGLLQQPGVGV
EMLAGDPADDPYDFKEGDIEYSFPTSKRLKGQGRDPNRKSKGEEMNANGAVPDGKDAMSI
FSSAPKSDESPQDDAAAKANAPLTRETDLVVLYSDLENIFDEEEDELGGTHPNQQSARAA
VPGSEERPLGKEGRVAVPYPSTVADLQRMFPTPPSLEQHPAFSPIMIYRDTPSQEPPPPS
TGLDHPLGPMASTQLADFRMEVEECLASPRPEDIRDFSFVYRVPPVQPQMGCSMFAPLRT
LPSQCLPPLKIPDSCYYRPSWTLMPKMEPYSLPSQAPFIRDGYVNVPSVNNMLEQDYGQM
SVVSVASVGTAGGGVLPSPSPATPRFSVPTPRTPRTPRGGPGNASGQGSVKQEGGVPTGG
GTELSSPASTPASSSLPLSSVEQGGTGGRGSFLALPEAHSLYAVLLLSDSVLDVFKDRNF
DSCCICACNMNVKGADVGVYIPDSTREDQYRCMCGFSAIANRRLAHGAGLFLEDELDIFG
RGSEVGRAAERRLALCRRELPVCEPPAASKNSKRLPQSDSSSSSFALTAVMVQLQAQCSQ
PLASLSSLHLSPACSCHGRRGALLQSWAADRLWADGSDACVECYNALVQGQQYVDNPAGG
KVDQAIVRSSALHSWPHTSVLDISTLSSQDVVRMLLSLQPFLQDAIQKKRTGRTWENIQH
VQGPLTWQQFHKMAGRGSYGSEESPEPLPIPTLMLGYDKDFLALSPLALPFWEKLLLEPY
GGHRDVAFLVLCPNSAALLAGARTFFQELSAVYETCRLGKHRPLAKVSRDGLVHVGDTPE
GERVEEDELVEQWFTGPWSGQHQEDNMRKLKLYAHACRKQLAPQLAGLSIDSSLLVPPKA
QPPPSQPASSGGQAAPGSGAAEGDPAAAAPSTGSTSLGSSSGQQGSGELGQGGGGEAKSG
ANPTSSSTPAPAQPTETLESIAERERIGIPTLADAADSHAHPPAIVLYVVDPFLCGGGAG
TGGGGEGEEQDVEGGSVWMLALLRCFTELLQLLPENMRPALTLQVVPCQYLLQPASGENP
LYLQQLRSLAFSTYSQCRRLLPTQTHIKSLTGFGPASTIDKTLNNTQDPNPPMQVFSPPF
ILGPTRSKQPEPGEAWAEAAPRYNVLFVGYCLSHDQRWILVSCTDQQGELLETCIINIDV
PNRSRRPKFSPRKKGLEKLWEWCIGIIQMTSMPWRIVIGRLGRLGHGELKDWSSYLGEHS
LHSVSRQLREACRMCGISASDSPSILSACLVSMEPQGSFVVMPDAVTMGSVFGRSTALNL
QTSQLNTPQDASCTHILVFPTSATIQVAPSSYPTEDNPDDMFGLPFPDELENDIGHDMML
ITGNLHPSPNTSPVPSPVSPSGIGMGSHFQHTRSQGERLLSRESPPEELKQQPLALGYYV
STARADGLPHWFWASCPQAQNQCPLFLKASLHHHISVAQTDELLSSKSSQRSPHPLDSKT
TSDVLRFVLEQYNALSWLTCNPATQDRRSCLPVHLTVLTQMYNAIFNML
NT seq
6630 nt
NT seq
+upstream
nt +downstream
nt
atgactacagcagcgaattgggtggctaacggggcaagccttgaagactgccattccaac
attttctccctggcggaactgaccggcatcaaatggcggtgctaccacttccgcagcgga
ggcgagtatgggccggtgatctcggcccctgcaccggacgacccggtgctgcggagctac
acgcgctgtgtgcaggccaacctgctgtgcgtgtggcgccgcaaggtcaagcccgacgcc
aaggagctctggatcttctggtggggcgaggagcccaacttgaccgacgtcatccaccac
gagctggaagttgctgaggaaggactctgggagtgtggtctttcctatgagtgcaggaca
ctcctcttcaaagccattcacaacctgctggagaggtgtctgctggataaggactttgtg
cgcattgggaagtggtttgtgaagccacacgaactggaagaaaagaccctaggcagcagc
gagcacttgtcatgtgcgtttacattcttcctgcacggtgagagtaatgtgtgcaccagt
gtggagatagcccagcaccagccagcctaccacatcagtgcccagcacatccacctggcc
cagacctcatccagccctgtgcaagtgatcctgagtccgtacgggctgtgcggcacgctg
acgggtcagacgtataagatgagcgagccggctgtgaggaagctgatggaggagtggagc
cacttctaccccactgtactccgccgccggagccccgagcctgagcgcactgaccagacg
gccgacctgaactacgacgtccatggacacgccgccgtcgaggtcatcgtaggcggcgtg
agaatgatctacccagcagcctttgtgctcatcgctcagagcgacctgcctgcggagcag
cccccttcggccccgggcagccaggggggcggcagggacctgtccggctgtggcatcccg
ctcacccctcccacgtcgcccgaacagccatgctcaggtgatagtggctttcagacagcg
gtgtccagtgttaacagccaagagggctgcatgaccctcagcccaaagcactctgggaag
aagctgaccaatcagatggtccatcaggcctggaaggagtgctacctgaaccagctgcag
cgcaaggccagtctgtctagcagtgcagtgtcggcggcggcgccgcccgtgaaggagcca
gtgccaagcggcggcgccgcggcagcggcaacggcagcggccacatgggacttcaccagc
cccggggagagagtggcctgcagctgttccaggttaaagcagcagaagcagcagcaggcc
agctcagcatctgccagcaccacgcccggtgccaatgccgccccctcttctaccaccacc
tcctcttcctcttcctcctcctcctcctcttcctctgccacctcctcctcctccaccccg
tcctcctgctccctgccagccttgcccccgcccgcgcctcctccgtccaagcacaaggtg
gccgacaagccggacaagtcggacaagcaggccaagcgacccaccgtcacccccttccac
caccgggtgtccgccagccaggggcccacatgccccgaccacgaagcccagcaagggggc
cctcagttgggcttagtcccactggagccccccttagaggctctgcccgggtgcaacaag
tacccgcccaagccgctgtcgtccatgcggaaggggacggccgagtcgctcatgcactcg
cccatctccccgctgcccccgacgctgagcccccacccacgggggcagcaggatcccgag
gcgctggacgtgtccgccagcctgccgcagtgccaagatgggccgatggggggccccatg
ggggggcccatggaggtgagcgagacggccctgtatgcgccacctctgggccccagagac
gcggggggtggagggggctggtggaaaggctataagaccccctgtgtggagaggagcgac
ttgagacccccggatctgcccagcgccgagagagtggagagcaagaccgacacagccgca
gagggcatggcactgaaaaggctgttcacacagacgcataagcgctttaaagtgagcgag
gagcgggtgaaggagcacatcagcatgctgggcctcctgcagcagcccggcgtcggcgtg
gagatgctggccggcgaccccgccgacgacccctacgacttcaaggagggcgacatcgag
tacagcttccccacctccaagaggctcaagggccaggggcgagatcccaaccgcaagagc
aagggagaggagatgaatgccaacggagcagtgcctgatgggaaggacgccatgtccatc
ttcagcagcgcccccaaatcagatgaatcacctcaagacgacgcagcagcgaaagccaac
gctccactcacccgggagacggacctggttgtcctctactctgacctggagaacatcttt
gatgaggaggaggatgagctagggggcacgcacccgaaccagcagtcagcacgggccgcg
gtcccaggctcagaagagcgccccctgggcaaagaggggagagttgcagtgccgtaccct
tcaacagtagcagacctccagcgcatgttccccacgccgccgtcgctggagcagcacccg
gccttctcccccatcatgatctaccgggacacgcccagccaggagcctccgccgccctcc
accggcctggaccacccgctcggccccatggcctccacccagctggccgacttcaggatg
gaggtggaggagtgcctggccagccccagaccagaggacatacgagacttctcatttgtc
taccgtgtccctcccgtccagccacagatgggctgctccatgttcgcaccactgcggacc
ctgcccagtcagtgcctgccgccgctcaagatcccagacagctgctactaccggccctcc
tggaccctcatgcccaagatggagccctacagcctcccctcgcaggcccccttcatcagg
gatggctatgttaacgttcccagtgtgaacaacatgctggagcaggattatgggcagatg
agtgtggtgagtgtggcgtccgtgggtacggccggcggcggtgtcctgccctccccctcc
ccggccacaccgcgcttctctgtgcccactccccgcaccccgaggaccccacgtggcggc
ccgggcaacgccagcggccagggctccgtcaagcaggagggcggggtgcccacgggcggc
ggcacggagctcagctcgcccgcctccacgccggcctcgtccagcctgccgctgagctcg
gtggagcagggtggcacgggcggccggggctctttcctggcgctgcccgaggcgcacagc
ctctacgccgtgctgctgctgtccgactcggtgctggacgtcttcaaggaccgcaacttc
gacagctgctgcatttgcgcttgcaacatgaacgtcaagggcgccgacgtgggcgtctac
atccccgactcgacgcgcgaggaccagtaccgctgcatgtgcggcttcagcgccatcgcc
aaccgacgcctggcccacggcgcgggcctcttcctggaggacgagctggacatcttcggc
cgcggctcggaggtggggcgtgctgccgagcgccgtctggcgctgtgccgacgcgagcta
cccgtctgcgagccgcctgccgcgtccaaaaactccaaacggctgccgcagagcgactcg
tcctcgtcgtccttcgcgctgacggcggtgatggtccagctgcaggcgcagtgctcgcag
cccctggcctcgctctcctcgctgcacctgtcgcccgcttgctcctgccacggccggcgt
ggggcactgctgcagagctgggcggctgaccgcctgtgggccgacggcagcgacgcctgt
gtggagtgctacaacgcgctggtgcagggccagcagtacgtggacaaccccgccgggggc
aaggtggaccaggccatcgtccggagcagtgcgctgcactcctggccacacacatcagtg
ttggacatcagcacgctgtcctcccaggacgtggtgaggatgctgctgtccctgcagccc
ttcctgcaggacgccatccagaagaagcgcacaggccggacctgggagaacatccagcat
gtgcaggggccactcacgtggcagcagttccacaagatggcaggccgagggtcctacggt
tcggaggaatcccccgagccactgcccatccccacgctgatgcttggttacgataaggac
ttcctggcgctgtcgccgctggcgttgcccttctgggagaagctgctgttggagccctac
ggcggccacagggacgtggccttcctagtgctctgccccaacagcgccgccctgctggct
ggagcccgcaccttcttccaggagctcagtgctgtgtacgagacgtgtcgactagggaag
catcgacccctggccaaggtgtcccgtgacgggctggtgcacgtgggggacactcctgag
ggtgagcgcgtggaggaggatgagctggtggagcagtggttcaccgggccctggagcggc
cagcaccaggaggacaacatgcgcaagctcaagctctacgcacacgcctgccggaagcag
ctggctccccagcttgctggtctgtcgatagactccagcctcctggtgcctcccaaagcc
cagcctcccccctctcagcctgcctccagcggcggtcaggctgctccaggttccggtgct
gcagagggggacccagcagcagctgcccccagcacaggcagcacgtccctggggtcgagc
tcaggccagcagggcagtggtgagctgggacaggggggtggcggcgaggccaagagtggg
gcgaaccccacgtcctcgtccacaccagcacctgcccagcccacagagaccttagagagc
attgcggagcgcgagcgcatcggcatccccacgttggcggacgcggccgacagccatgcc
cacccgccggccatcgtgctgtacgtggtcgaccccttcctgtgtggaggcggggccggg
acgggtgggggtggagagggggaggagcaggatgtggaaggaggaagtgtgtggatgctg
gcgctgctgaggtgcttcaccgagctgctccaactgctgccggagaacatgaggcctgcg
ctcacactacaggtggtgccatgtcagtacctcctgcagcctgcgagtggtgagaacccc
ctgtacctgcagcagctgcgctccctggccttctccacctactcgcagtgcagacgcctg
ctgcccacgcagacacacatcaagtccctcacgggcttcggacccgcgtccaccatcgac
aagaccctcaacaacacacaggaccccaatcctcctatgcaggtgttctctcccccgttc
atcttgggccccacgcgcagcaagcagccggaaccgggggaggcctgggctgaagcggcg
ccccgctacaatgtgctctttgtgggctactgcctgtcacacgaccagcgctggatcctg
gtgtcctgcaccgaccagcagggggagctactggaaacctgtatcatcaacatcgacgtg
cccaacaggtcacgacggccgaagttctctccacgcaagaaaggcctggagaagctttgg
gagtggtgcataggaatcatccagatgacatcgatgccttggaggattgtgattggtcgg
ttgggtcgtcttggccatggagagctgaaggactggagttcttatctgggggagcactct
ctgcactcagtgagtcggcagctgagggaggcgtgccggatgtgtggcatctcggccagc
gactcgccctccatcctcagtgcctgcctcgtctccatggagccgcaggggtcctttgtg
gtcatgccagatgctgtgaccatgggttcggtgtttggccgtagcacggcgctgaacctg
cagacgtcccagctgaacaccccacaagacgcctcctgcactcacatcctggtcttcccc
acctcagccaccatacaggtggcccccagctcctaccccaccgaggacaacccagacgac
atgtttggtctgcctttccccgacgagctggagaacgacatcggccacgacatgatgctg
atcacgggcaacctgcacccgtcgcccaacacctcccccgtgccctcgccagtctcgccc
tcgggcatcggaatgggctcccacttccagcacacacggagtcagggtgagaggctgttg
tcgcgcgagtctccccctgaggagctgaagcagcagccgctggctctgggctactacgtg
tccacggctcgcgctgacggcctgccccattggttctgggcctcctgcccgcaagcacag
aatcagtgcccactcttcctcaaggcgtccctgcaccaccacatctctgtggcccagaca
gacgagctgctgtccagtaagagctctcagaggagcccccatccgctcgactccaagacc
acatccgacgtgctcaggtttgtgttggagcagtacaacgccctctcctggctgacctgc
aatcctgcgacgcaggaccggcgctcctgcctccccgtccacctgactgtcctcacacag
atgtacaacgccatcttcaacatgctctag
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integrated database retrieval system
