Alosa sapidissima (American shad): 121680344
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Entry
121680344 CDS
T11137
Symbol
smarcad1b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1b
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
asad03036
]
121680344 (smarcad1b)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121680344 (smarcad1b)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
HHH_3
Rap-GAP_dimer
Motif
Other DBs
NCBI-GeneID:
121680344
NCBI-ProteinID:
XP_041915613
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All DBs
Position
13:16303304..16330915
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AA seq
953 aa
AA seq
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MMRNNKGDTKHNVRTTRRRKDVHKDVSLTGAIVPETPESKRPSGPGSSCIVLDSDPGTDT
SDTDLSGSSLFKDNEQEQSDKNVIVLSDQSEETEDSADEVSPSSPQVSTKWSGESEAACK
RKWEIDESQPSSDSLPRKKRKPSVTDDSENEGPEPTWKEQEDMVKKLQIHFPHLDKEGLR
DVLHEHDWLYEDTLEALRMFSEEAEVPAENDAPSPKPSRRDVSPPSRSSITRTASQPTKA
TPKPTLEPSSPKRPHRTAEEVPQNGTRVLRKRNPRPVVSYDLDSDSDGGVAKAVSDFEAL
TSDSDSEGESSERLTAQTKQILDFFQEASMEELSLIEGCSAKKALKIVELRPFKNWRDLD
KALSGGNGLSMELLAGCREVLRERDVVQRLMGHCEEIAQKMSRDVTQVLESGTGSMEQPR
VLNDTFKLKPYQLVGLRWLTLLHQHNLSGILADEMGLGKTIQAIAFLASLYQEGNRGPHL
IVVPASTLDNWVRELNLWCPSLEVLVYHGTAEERRFTRYEALNNMVEYNIIVTTYNLAIG
NSSDRSLFRKLKLEYAVFDEGHMLKNMNSLRYRHLMAINADHRLLLTGTPLQNNLLELMS
LLNFIMPSMFSSSTAQIARLFSMNSSEGQSSFERKRITHAKLIMKPFILRRVKSEVLKQL
PAKEESVEFCPMSAKQQQLYSALIRKLKGTTTNGEKRELTNAMMHLRKMANHPLLHRQYY
TSERLTTMSKLMLNELTHRDSDPVLVKEDMEVMSDFELHRLCQQYSALRECKLGSDLLLD
SGKLHFLTKLLASLKEEGSRVVLFSQFTMMLDILEIFLKHHSHRYIRLDGSTPMADRIGL
IDEFNTDQDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTRTV
KVIRLISKDSIEDGMLRIGQKKLKLEQDMTACEGEEDNISDDMASLLKASLGL
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggaataacaaaggagacactaaacataacgttagaactacccgccggaggaag
gatgtgcacaaagatgtatcgttaactggcgcgattgtaccagagaccccggagtccaaa
cggcccagtggaccagggtccagctgtattgtgctggattcagatccggggacagacacg
tctgacaccgacctgtcggggagctcactgttcaaagacaacgagcaggagcagtctgac
aagaatgtgattgttctgtcagatcaatcagaagagactgaagatagtgcagatgaggtg
agcccctcatcgcctcaagtctccacaaaatggtcaggagaatcagaggcagcctgtaaa
aggaaatgggagatagacgagtcgcagccgagttctgattcgctccccagaaaaaagcgg
aagccatccgtgaccgacgattcagagaacgagggcccagagcccacctggaaggagcag
gaggacatggtgaagaaactgcagatccacttccctcacctggacaaggagggactgagg
gatgtgctgcatgaacatgactggctgtatgaggacacactggaagctctgcggatgttc
tctgaagaagccgaggtgcctgcggagaacgatgctccttcccccaaaccctccaggcgt
gacgtgtcccctccctcacggtccagcatcacacggacggcgtcccagcccactaaagcc
acgcccaaacctacgctggagccgtccagcccgaaaagacctcacagaaccgcagaggag
gtcccacagaacggaaccagagtgctgcggaaacggaacccgcggcctgtggtgagctac
gacttggactccgacagcgatggtggtgtagccaaggccgtcagtgactttgaggcgttg
acgtcagactctgattcggagggtgagagcagcgagcgcctgaccgcgcagacgaaacag
atcttggacttcttccaggaggcgtcaatggaggagctgtcgctcatcgaaggctgctcg
gccaagaaggccttgaagatcgtggagctcaggcctttcaagaattggcgagacttggat
aaggccctgagcggcggtaacgggctgtcgatggagcttctggcgggctgccgggaggtg
ttgcgggagcgggacgtggtgcagcgcctcatgggccactgcgaggagatcgcccagaag
atgagccgcgacgtcacccaggtgctggagagcggcacagggtccatggagcagccacgc
gtcctcaacgacacgttcaagctgaagccgtaccagctggtgggactgcgttggctcacc
ctgcttcaccagcacaacctcagcggcatcctggcagacgagatgggtttggggaagacc
attcaggccatcgccttcctggccagcttgtatcaggaggggaaccgcgggccacacctc
atcgttgtgcctgcctccacactagataactgggtgcgtgagctgaatctgtggtgcccc
agccttgaggtcctcgtttatcacggcacggccgaggaacgccgcttcacccgatacgag
gccctcaacaacatggtggaatacaacatcatcgtgaccacgtacaacctggcgataggg
aactcaagtgaccgcagtctgttccgtaagctgaagctggagtatgctgtgtttgacgag
ggccacatgctgaagaacatgaactcactgcgctatcgccacctcatggccatcaacgcg
gatcaccggctgctgctgacaggcacgcccctgcagaataaccttctggagctcatgtcc
ctgctcaacttcatcatgccctccatgttctccagctccaccgcccagatcgcccgcctg
ttctccatgaactcttctgaagggcagagcagctttgagaggaagcgcatcacccacgcc
aagctcattatgaagcctttcatcctcagacgcgtcaagagtgaggtgctgaagcagctg
ccagctaaagaggagtctgtggagttctgccccatgagcgccaagcagcagcagctctac
agcgccctcatcaggaagctgaagggcaccaccactaacggagagaagcgtgagctgacc
aatgcgatgatgcatctgcgcaagatggccaaccacccgctgctgcaccgtcagtactac
acctctgagcgcctgaccaccatgagcaaactcatgctgaacgagctgacccaccgggac
tcggacccggtcctggtgaaggaggacatggaggtgatgtcggactttgagctgcaccgg
ctatgccagcagtactctgctctgagggagtgcaagctgggctctgacctgctgctggac
tccgggaagctgcactttctcacaaagctgctggcgtccctcaaagaggaggggtcccga
gtagtgctcttcagccaattcaccatgatgctcgacatcctcgaaatcttcctcaagcat
cacagccaccgctacatccgattggacggctcaacgcccatggctgacaggattggcctg
atcgacgagttcaacacggaccaggacatctttgtgttcctgttgtcaaccaaggcaggg
gggctgggcattaatttgacttctgccaacgtggtcatcttacacgacatcgactgcaac
ccgtacaatgacaaacaggcagaggatcgttgccaccgtgtgggtcagacaaggacagtg
aaggtgatcaggcttatcagcaaagattccatagaggacggtatgctgcgcatcggacag
aagaagctcaaactggaacaggacatgaccgcctgcgagggtgaggaggataacatatcc
gacgatatggcctctctcctgaaggcatcattgggactgtaa
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