Alosa sapidissima (American shad): 121680600
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Entry
121680600 CDS
T11137
Name
(RefSeq) homeobox protein cut-like 1 isoform X1
KO
K09313
homeobox protein cut-like
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121680600
Transcription factors [BR:
asad03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain CUT
121680600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CUT
Homeodomain
Homeobox_KN
HTH_50
Motif
Other DBs
NCBI-GeneID:
121680600
NCBI-ProteinID:
XP_041915970
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Position
13:complement(29085229..29103674)
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AA seq
1397 aa
AA seq
DB search
MAADARSMFQYRKNSDTQLQDKAEAALLEAYEQLVDVSAILSYTGRTSMLEKTQMKLQES
FPSESTPHKALDSQLDGRLIGSACLDAQGIEETMVPTQHPPPSPSPSSPSPTDPSARRHK
DQCQTERPDPGELFSLRLAKAEERIRSLQSALMSSQSEVLNLQRQYDEERTSRAKEAVNL
MVANIEMVNQRVEAAPIGADIVRENVDRSCISAQNGSSPGERVGMERARLEMVIADRDRE
ILRLREEVRRLQLMLHEAQESTTNQITQLEGQLARKIESIERLQVRLQSQQDYEQIKTEL
RIFRAMKEASLNGRISQLCSPLSERLTPMRPLKESSAISVTREMEVKRETQTPVGLPVAM
DTPPPGSPRPAASSQGSSPRTLPLSPLSQSPDRPLLSPLIKPEPSPPGPLPEALYGPKGD
LSFEGSRSPSRASHSSDGGMTGEPWEGGGGGGGGGGGSREEGEGELMETSEIALQVKEQL
LRHNIGQRVFGHYVLGLSQGSVSEILARPKPWSKLTVKGKEPFLKMKHFLSNEQNILALR
NIQVRQRGNITPRIRTPEMGSDEAIRNILEQAKKEIQREGEEISPLRTSGSGPSGRLSAG
RGSSSGAGDSDDTIKAILEQARREMVAQQRHQALREMAVCHWGTSSSAAAATSSPPASTE
PRPPSVKQEGASSSITVSSPQLLQQTPLSVISPKDFVQNIIRKVKSEIGDAGSYQGGHWS
ATSSTSHPLTSASPSLCSTTSSSSPFSNLAGQSSSWPDPWSRQPFGREQDQEDALSSQGE
GGHMVKVKVEAEEEEQDEGAGHLSPCSAYVTRPPKPIVPPLTPDQYDSFMHQQVDTVLLT
RQVKDRLAQKGICQRIFGEKVLGLSQGSVSDILSRPKPWSKLTQKGREPFIRMQLWMQGQ
LGQKLSPSPPNNDPSLEQDPALVNSSPSPDEERAGLLSEPGSLSLESSKENQQPPQQQGG
HRGLGSLEVPHPTLSALDVQQLAILSPELDTLSITRRVKEVLNSNNLGQRLFGEMILGLT
QGSVSDLLARPKPWSKLSLKGREPFVRMQLWLKDPQNIEKLREMKKMDSRGYLKRHHNLL
SSGLDRDSPASASDMASYLESSHPGQAKKARVVLATQEKEALKRAYQLEPYPSQSTIERL
ASQLGLKISTVINWFHNYRSRMRRDFEEGELLKADTLKPLPGGDLKEMHQMHCSQSPSKG
DHSLSMPVGLVTVKQEPWELREAEEQPSETDAHLTKYISMGVQFAGRLEMKEESLRNPSP
RLCSRLNQEVRGECGETSASLPKPDRLPGIPPVSHASEAQTFSHSSKEDTEPEANAAAAA
SASSSPTHTLPPVSPLPSSTTPTPLTSEAAAEQITVQQSLVAGHSTQQRSAKKANLDNII
HRLERAANREEMLEWEF
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgatgccagatcaatgtttcaatataggaaaaattcggacacacaattacag
gacaaggcagaggctgccctgctggaggcgtacgaacagctagttgatgtctcggccata
ctgtcttacactgggcgcacctccatgttggaaaagacgcagatgaaacttcaagaatcc
ttcccttcagaaagcacaccacacaaagccctcgacagccagttggatggacgactcatt
gggtccgcttgcctagatgctcagggcatagaggagacgatggtgcccactcagcatccc
ccaccctcaccctccccctcctcaccctcacccactgacccgagtgcccgtcggcacaag
gatcaatgccagactgagcgcccggatccgggtgagctgttttccctccggctggccaaa
gctgaggagaggatccgatccctccagtcagccttgatgtcttctcaaagtgaggttctc
aacctgcagaggcagtacgatgaagagaggacctccagggcaaaggaggctgttaacctg
atggttgctaatattgaaatggtcaaccagagagtggaggcagcgccaattggtgcagac
attgtgagggagaatgtggacagaagctgcatctccgcccaaaatggctccagcccaggg
gagagggttggaatggagagggcccggctggagatggtcattgctgaccgggaccgggaa
atcctccgcctgagggaggaggtgaggagactccagctgatgttacatgaagcccaggag
agcacgaccaatcagatcacacaactagagggacaactggctcgtaagattgagagcata
gagaggcttcaggtgagactacagtcccagcaggactacgaacagatcaaaacagagctc
agaattttccgggccatgaaagaagcctcgctcaacggccgcatttcacagctgtgctcc
cccctctcagagagactgactccaatgaggcctttgaaagagagttctgcgatctccgtc
acaagagagatggaggtgaagcgagagacacagacgccagtggggctcccagtcgccatg
gacactcctccgcccggcagcccgcgccctgccgcctcctcccagggctcctcgccccgc
acgctcccgctcagccccctctcgcagtcccctgaccggcccctgctgtcccccctcatc
aagccggagcccagcccccctgggccactccccgaggccctctacgggcccaagggtgat
ctgtccttcgagggcagccggagcccgtcacgggccagccacagctccgacgggggcatg
actggagagccatgggagggtggaggaggaggaggaggaggaggagggggcagcagggag
gaaggggagggtgagctgatggagacatcggagattgccctgcaggtgaaggagcagcta
ctgaggcacaacatcgggcagcgggtgtttggtcactatgtgctggggctctcccagggg
tcagtcagcgagatcctggcccgacccaagccctggagcaagctgactgtgaagggcaag
gagcccttcctgaagatgaagcacttcctgtccaatgaacagaacattctagcacttcgc
aacatccaggtccgacagagaggaaatatcactccacgcattcgcactccagaaatgggc
tcagatgaggccatcagaaacattctggaacaggccaagaaggagatccagagagaaggt
gaggaaatctccccacttaggacctctggttcaggtcctagcggccggctctctgctgga
cggggcagtagcagcggggcaggggacagtgacgacaccatcaaagccatcctggagcaa
gcgcggcgtgagatggtggcccagcagcggcaccaggccctgcgggagatggccgtatgc
cactggggcacctcctcctccgccgccgctgccaccagcagccctccagcctccacggaa
ccccgacccccatcggtcaagcaagagggggccagctccagcatcactgtgtccagcccc
caactcctccagcagacgccgctcagcgtcatctcccctaaggactttgtccagaacatc
atacgcaaagtcaagagcgagatcggcgacgccggctcctaccagggcggccactggtcg
gccacatctagcacctcgcacccgttgacctcggcgtcgccctcgctgtgctccaccact
tcgtcctcgtcccctttctccaacttggcgggtcagagctcatcctggcctgacccttgg
tcacgtcagccgttcggtagagagcaggaccaagaggatgccttgtccagccagggtgag
ggtgggcacatggtgaaggtcaaggtggaggccgaggaggaggaacaggacgagggagca
gggcatctttctccgtgctctgcctatgtgacacgcccacccaagcccatcgtgccccct
ctgaccccagatcagtacgactccttcatgcaccagcaggtggacacagtgctgctgacg
cgacaggtcaaagacaggctggcacagaagggcatctgccaacgcatctttggagaaaag
gtgctgggcctttctcaaggcagtgtgagtgacatcctgtcccgacccaaaccctggagc
aagctgacccagaagggcagagagcccttcattcgcatgcagctctggatgcagggccag
ctgggccaaaagctgagccccagtcctccaaacaacgacccctccctggagcaagaccca
gcactggtgaactcctcacccagcccagatgaggagcgggcgggcctactgagtgagcca
ggcagcctgagcctggagagcagcaaagagaaccagcagcctccccagcagcagggagga
caccggggcctagggtccctggaagtgccccaccccaccctgtcggcgctggatgtccag
cagctggccatcctgtcccctgagctggacacgctcagtatcacaaggagggtgaaggag
gtcctcaacagcaataatctcgggcagcgtctgtttggagagatgatcctgggcctgacg
cagggctctgtgtctgatctgttggctcggcctaaaccctggagcaaactgagcctaaag
ggccgggagcccttcgtgcgcatgcagctgtggctcaaagacccccagaacattgagaag
ctgagagaaatgaagaagatggacagcagagggtacctcaaacggcaccataatttactg
agctccggcttggaccgagactcgccagccagcgcttcagacatggcttcctatctggag
tcttctcacccaggccaagccaagaaggccagagtggtgctcgccacccaggagaaggag
gctctgaagagagcctaccagctggagccctacccctcccaaagcactatagagagactc
gcctcccagcttggtctcaagatcagtacagtgatcaactggttccacaactacaggtct
cgcatgagaagagattttgaagaaggagagttgcttaaagcagacaccttgaaacctctc
cctggtggtgacctaaaagagatgcaccagatgcattgtagccaaagtccctccaagggg
gaccactctctcagcatgcctgtaggcttggtgactgtcaaacaggaaccgtgggaacta
agggaggcagaggagcaaccatcagagactgacgctcacctgaccaaatacatctccatg
ggcgtgcagtttgcaggcagactggaaatgaaggaggaaagcctgagaaacccgtctcct
cggctgtgttcgagactcaaccaggaggtcaggggggagtgcggagagacatcagctagc
ctcccaaaaccagacagacttccgggcattccgccagtgtcccatgcatcagaggcccag
acgttttctcacagctctaaagaggacactgagcccgaagccaatgctgctgctgctgct
tctgcctcatcgtctcccacacacactctacctccagtctcccctcttccctcatcaacc
acaccaacaccacttacctcagaagctgctgctgagcagattaccgtccagcagagcctt
gtggctggccacagcacccagcagcggagcgccaagaaggctaatctggacaacatcatc
catcggctggagcgggcggccaacagggaggaaatgctggagtgggagttttag
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