Alosa sapidissima (American shad): 121680675
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Entry
121680675 CDS
T11137
Symbol
cacna1bb
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04010
MAPK signaling pathway
asad04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121680675 (cacna1bb)
04020 Calcium signaling pathway
121680675 (cacna1bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
asad04040
]
121680675 (cacna1bb)
Ion channels [BR:
asad04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121680675 (cacna1bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
121680675
NCBI-ProteinID:
XP_041916097
LinkDB
All DBs
Position
13:4612971..4764989
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AA seq
2555 aa
AA seq
DB search
MAMRRALPYSRWAERRSTVVYAVRSATFGAWRMLTLGAEYSSWSRTDTSNRERHTATFGP
GENDDSLDESDVGTEEPIYYDTIYELEGSFHSKNVPNIVDAHETFSEDIDTPWSGRMARF
GDDLPTRYGGGGPPGAGRGGARAGGPPGGQRMYKQSMAQRARTMALYNPKQTKQNCFTVN
RSLFIFSEDNVIRKYAKRITEWPPFEYMILATIIANCIVLALEQHLPSGDKTPMSERLDD
TEPYFIGIFCFEAGIKIIALGFVFHKDSYLRNGWNVMDFVVVLTGILTVAQSTVGSATDK
VGSEFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAIVMFAIIG
VEFYMGKFHTTCFNLDTGERAADHPCGIERPSRQCDNGTECREYWIGPNFGITNFDNILF
AILTVFQCITMEGWTDILYNANDSSGNTWNWLYFVPLIIIGSFFMLNLVLGVLSGEFAKE
RERVEKRREFLKLRRQQQIERELTGYLEWICKAEEVLLAEEDQNAEEKSAMDGAWYKRKQ
NNPVLKRGKVKKSKNDLIHAEEGEDHFADLSSVAPPGSPFARASLKSSKNDSSSYFRRKE
KRLRFFIRRMVKAQSFYWFVLCVVGLNTLCVAIVHYDQPEGLTKALYLAEFVFLGLFLTE
MTLKMYGLGPRNYFHSSFNCFDFGVILGSILEVVFAAIHPGASFGISVLRALRLLRIFKV
TKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFDN
FPSAIMTVFQILTGEDWNAVMYHGIESQGGVHGGMFSSVYFIILTLFGNYTLLNVFLAIA
VDNLANAQELTKDEEQQEEEANKKLALQKAMEVKEVSPMSAANISITTFVKQNRGAISRS
SSICSAHSPSETRDISDPESAYIRTYLYTPTRSFMSREQRSLKLSVWEQRTTQLRRHNLR
ASSEALYNELEPEERRRLSSALHLRPDMKTHHDRPLLVEPANAANGDGNGNGNGAVEKPP
RPATEGEVQGDLQQQQSHPHKHHRHRDRSAHENGEAQGEGRPGGGSVSVRHHTHHSRSRE
RREGRLEHSHSQDGGPHGGHRHHHHQGAGSPEDEGGDREREREHRHHHSHRQSRSEGNGG
LSNGGRGERRSRAHRDGEREANGERRRHQQRLLRAQSTLDGDVARENGDRERSKTHGDRH
SDTEADGWTTSPLQSPSEPLPVAEKPEDADNMKNNNRSGQTSIHIPVTITAPPGETTIIP
MNNLDGESLLLNEEKKELEEEETQNGPRQILPYSSMFVFGQTNPVRRLCHYVVNLRYFEM
CILLVITMSSIALAAEDPVMANAPRNNVLKYLDYVFTGVFTFEMVIKMIDLGLLLHPGSY
FRDLWNILDFIVVSGALVAFACTSMMGGTKGKDINTIKSLRVLRVLRPLKTIKRLPKLKA
VFDCVVNSLKNVLNILIVYILFMFIFAVIAVQLFKGKFFYCTDESKTLEKDCRGKFLEYD
RDKVEAKDREWKKYDFHYDNVLWAFLTLFTVSTGEGWPMVLKHSVDATDEDEGPSPGFRM
EMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKAMSDCSLEKNERACIDFAINAKPLT
RYMPQDKQSYQYKLWKFVVSSPFEYSIMTLIALNTIVLMMKFHDAPKPYEDMLRYLNIIF
TALFTLECIIKMIAFGPLNYLKEAWNVFDLITVLGSITDILVTEIKTNKLINLSFLRLFR
AARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNILLNDDTA
INRHNNFQTFFQALILLFRSATGEAWHEIMQHCLSERECEPNSGHTGKECGSDFAYFYFV
SFIFLCSFLMLNLFVAVIMDNFEYLTRDASILGPHHLDEFIRVWAEYDPAACGRIVYKDM
YNLLRAISPPLGLGKNCPNRVAYKRLVRMNMPIAEDNTVHFTSTLMALIRTALEIKLASG
VLAQRLCDADLKREINRVWPSLQAKTVDLLVTPPKPTELTVGKVYAALMIFDYYKQNRAK
KLQQLQQQQQPGVGVGVGIPGKVGALFRPMLPLTQIQEQTPLVTSAKAPPAAQPDSLPQP
EPPPTTSLTNGEAVQTQGNAMKKSPSAETPQERQQRSRKSVQRGQSDDTQTSSKTQESGA
ELSDEYTSDMERFSILEGPGRASSMPRLNAEYQQRSHPRHTTGPYLPPILDASPMTMRRS
ASTLSPQRHQEASLREYGLQRPSQGQDRAHHHHHHHHHHCHKRREREKKHKSLERDSTEQ
TTSARGTVAEVTGEHVSRERARDRDRGRPHERKHHSVSGEPKTRYYSCERYGSREQGHAH
SAGPSRSTSPGEQHETLRLIQAGTTARGSPVIVASSTNTPNRSRRQLPQTPLTPRPAVAY
KTAHSSPVTMPSAGSRPCAGPSSVSGSSSTRLTRGLSEHNSLLADSGSPSPVPVTRIGSV
PSLAAEPRHPLPHPEEMDDFHDALSTYHGVGRSTRTLPSAAHAGAGAGLGSSALAQSGRS
GVPNGYHFALGMSSAAGSGARGAGGYQETEKEDWC
NT seq
7668 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgaggagggcacttccctactccagatgggcggagaggagatccactgtggtc
tatgctgtgaggtcagccacatttggtgcttggcggatgttgaccttgggcgcagagtac
agttcgtggtctcgcaccgacacatccaacagagagagacacaccgccacgtttgggccc
ggcgagaacgacgacagcctggatgagtctgacgtgggcaccgaagaaccaatatactac
gacacaatttatgaactcgaagggtcattccatagcaaaaatgttccaaatatcgtcgat
gcgcacgagactttctctgaggacatcgacacgccatggtctgggagaatggctcgcttt
ggagatgatctacccacccgctatggaggcggaggtccgccgggcgctggaagaggtggc
gcccgagcgggaggtcccccaggcggccagaggatgtacaagcagtcgatggctcaaaga
gccaggacaatggctttgtacaaccccaaacagacaaaacagaattgcttcactgtcaat
cgctccttgtttatttttagcgaggacaatgtcataaggaagtatgctaagagaattacc
gaatggcctccatttgagtacatgatccttgccactatcatcgccaactgcatcgtgttg
gccctggagcagcacctcccatcgggagacaagacccccatgtccgagcgcctggacgac
acagagccctacttcattggaatattctgtttcgaggccggcattaagatcatcgccctg
ggcttcgtctttcacaaagactcctacctccgcaacggctggaatgtaatggactttgtg
gttgtcctcactggcattctgaccgtagcgcagagtaccgtagggtctgcaaccgacaaa
gtaggctccgagttcgacttgaggaccctgcgggctgtgagagtgttaagacccctgaag
ctggtatcgggtatccccagcttgcaggtggtcttgaagtccatcatgaaggccatggtt
cctctgctgcagatcggcctgctgctcttctttgccatcgtcatgtttgccatcatcggt
gtggagttctacatgggcaagttccacaccacctgcttcaatcttgacacaggtgagcgg
gcagcagatcacccgtgtggcatagagcggccctctcggcagtgtgataatggcactgaa
tgcagagagtactggattgggcccaactttggcatcaccaactttgacaacatcctgttt
gccattctgaccgtcttccagtgcatcaccatggagggctggacggacatcctgtacaat
gccaatgattcgtcggggaacacctggaactggctctacttcgtccccctcatcatcatc
ggctctttcttcatgctcaatctggtgctgggtgtcctgtcaggggagtttgccaaagag
agggagcgcgtggagaagcgacgggagttcctgaagctgcggcggcagcagcagatcgag
cgcgagctgacgggctacctggagtggatctgcaaagccgaggaggtgctgctggccgaa
gaggaccagaatgcagaagagaagtctgcgatggatggtgcgtggtacaagaggaaacag
aacaacccagtgttaaaacgtggcaaggtgaagaagagcaagaatgacctgatccatgca
gaggagggagaagaccacttcgcagacctctcatctgtcgcccctccgggttctccgttt
gcgcgggccagcctgaagagcagtaagaatgacagctcctcctatttccgccgcaaggag
aagaggttgcgcttcttcatccgccgcatggtcaaggcccagagcttctactggttcgtg
ctgtgtgtggtgggcctcaacacgctgtgtgtggccatcgtccactatgaccagccagag
ggactcaccaaagcactctatttggcagaatttgtgttcttgggtctgttcctgacggag
atgacactgaagatgtacggccttggccccaggaactacttccactcctcgttcaactgt
tttgactttggggtgattctgggcagcatactggaggtggtctttgccgctatccatcca
ggagcttcgtttggcatcagtgttctcagggccctgcgcttactgcgcatcttcaaagtc
acgaagtactggaactccctgaggaaccttgttgtgtcgctgctcaactccatgaagtcc
atcatcagtttactcttcctgctcttcctcttcatcgtcgtcttcgctctgctgggcatg
cagctctttggtggccagtttaactttgaagacgaaacaccaacaacaaactttgacaac
tttccctctgctatcatgacagtcttccagatactgacaggagaggactggaatgcagtg
atgtatcatgggattgaatcccaggggggcgtccatggcggaatgttctcctcggtctac
ttcatcatcctcactctttttggaaactatactctgctaaatgtattcttggccattgct
gtcgacaatctcgctaatgcgcaggaactcacaaaggatgaggaacagcaggaggaagaa
gccaataagaagttggcccttcagaaggccatggaggtgaaggaggtcagtcccatgtca
gcggccaacatctccatcacaacttttgtaaagcaaaatcggggggcgatctctcgcagc
tcctccatctgcagcgctcattcaccatcagagaccagggacatatctgatccagagtca
gcttatatcaggacttatttatacacccctacacgctccttcatgagcagggagcagcgt
tcgctgaagttgtcggtgtgggagcagcgcaccacgcaactgcggcggcacaacctgcgg
gcgagcagcgaggcgctctacaacgagctggagcccgaggagcgccgccgcctctcctcc
gcactccacctgcggcccgacatgaagacgcaccacgaccgccccctgctggtcgagccg
gccaacgcggctaacggggacggcaacggtaacggtaacggggcggtggagaaaccgccg
aggccagcgacggagggagaggtgcagggcgatcttcagcagcagcaatcgcacccgcac
aagcaccaccgccatcgggaccgctcggcccacgagaacggcgaggcccagggggagggc
cggcctggcggtggcagcgtcagcgtcagacaccacacccaccacagccgcagccgggaa
cggcgcgaggggaggctggagcacagccacagccaggacggggggccccacggcgggcac
cgccaccaccaccaccagggggctggatccccggaggacgaagggggcgatagggagagg
gagagggagcacaggcaccatcactcccatcggcagtccaggagcgagggcaacgggggg
ctctccaacggaggccggggggagagacgcagcagggcgcacagagacggagagagggag
gccaacggggagcgcaggaggcatcagcagaggctactgagagcccagtccacactggac
ggagacgtggccagggagaatggagaccgagagcgctccaagacacatggagacagacac
tcggacacagaggctgacggctggaccaccagccccttgcagtctccctcggagcctctg
cccgttgcggagaaacctgaggatgcagacaacatgaagaacaacaaccgcagcggccaa
accagcatccacatccccgtgaccatcacagcaccacctggcgagaccaccatcattccc
atgaataatctggacggggagagcctccttctgaacgaggagaagaaggagctagaggag
gaggagactcagaacggccccagacagatcctcccctacagctccatgtttgtgttcgga
cagaccaacccggtgaggcggctgtgtcattacgtggtgaacctgcgctactttgagatg
tgcatcctgctggtcatcactatgagcagcatcgcgctggctgctgaagatcccgtcatg
gccaacgcaccgcggaacaatgttctgaagtacttagattacgtcttcaccggtgttttc
acctttgaaatggtgattaagatgatcgacctcgggctcctgcttcatcccggctcatac
ttccgtgacctctggaacattctagacttcatcgtggtcagcggcgctctggtggccttc
gcctgcacgagcatgatgggaggaacaaaagggaaggacattaacaccatcaagtccctg
agggttctgcgtgtgctgcgaccactgaagaccattaaacggttgcccaaactcaaggct
gtgtttgactgtgtggtgaactctctgaagaacgtgctcaacatcctgatagtctacatc
ctcttcatgttcatcttcgctgtcatcgctgtgcagctcttcaagggcaagttcttctac
tgcaccgacgaatccaagaccctggagaaggactgcaggggcaagtttttggaatatgac
cgggacaaggtggaagccaaggaccgagagtggaagaagtacgacttccactatgacaac
gtcctctgggcctttctcacactcttcaccgtgtccactggagagggatggccaatggtc
ctgaagcactctgtagatgccaccgatgaggacgaaggccccagcccaggcttccgcatg
gagatgtccatcttttacgtggtctactttgtagtctttcccttcttcttcgttaacatc
ttcgtggctttgatcatcattaccttccaggagcaaggagacaaagccatgtccgactgc
agtctggagaagaacgagagggcatgtatagactttgccatcaacgctaagccgctaaca
cgctacatgccccaggacaagcagtcataccagtacaagctgtggaagtttgtggtgtcc
tcgcccttcgagtactccatcatgaccttgatcgccttaaacactattgtgctgatgatg
aagttccacgatgccccgaagccttacgaggacatgctgcggtacttgaacatcatcttc
accgcacttttcaccctggagtgcatcatcaagatgatcgcctttgggccactgaattac
ctgaaggaggcctggaatgtgtttgacttgatcacagtgctgggcagcatcacagacata
ctggtgactgagatcaagacgaacaagctgatcaatctgagtttcctgcggctcttcagg
gcggcgcgcctcatcaagctgctgaggcagggctacaccatccgcatcctgctctggacc
tttgtgcagtccttcaaggcactgccgtatgtctgcctcctcatcgccatgctgttcttc
atctatgccatcatcgggatgcaggtgttcggaaacatcctgctaaatgatgacacagct
atcaaccgtcacaacaacttccagaccttcttccaggccttaatacttctgttcaggagt
gccacgggagaagcatggcacgagatcatgcagcactgcctgagtgagcgcgagtgtgaa
cccaacagtggccacacggggaaggagtgcggcagcgacttcgcctacttctacttcgtc
tccttcatcttcctctgctcctttctgatgctcaatctgtttgtggccgtcatcatggat
aactttgagtatctgacgcgagacgcctccatcttgggccctcaccacctggacgagttc
atccgcgtctgggccgagtacgacccggcagcctgcgggcggatagtctataaggatatg
tacaatctgttgcgtgcaatctctcctcccctcggcctggggaagaactgccccaacaga
gtggcctacaagcgtctggtcaggatgaacatgcccatcgctgaggacaacacagtgcac
ttcacctccaccctcatggcactgatccgcactgccctggaaatcaaactggcctcaggg
gtcctggcgcagcggctttgcgacgctgacctgaagagagagatcaaccgcgtgtggccc
agtctgcaagccaagaccgttgacctgctggtgaccccacccaaaccgacggagctgacg
gtggggaaggtgtatgccgctctgatgatctttgactactacaagcagaatcgtgccaag
aagctccagcagctgcagcagcaacagcagcctggagtgggagtgggcgtagggataccg
gggaaggtgggggctctgttccgccccatgctgcccttaacccagattcaggagcagacg
ccactagtcaccagtgccaaagcccctcctgcagctcagcctgattcgctgccgcagcca
gagcctccgcccactacctccttgaccaatggagaggcagtccaaacccagggcaacgcc
atgaagaagtctccgtcggcggagacacctcaggaacgacagcagagaagcagaaagtca
gtacagcggggccaatcagacgacacacagacctcaagcaaaactcaggaatctggtgca
gagctgagtgatgagtacacttctgatatggagcgcttctccatcctggaggggcctggc
cgagcctcctccatgcccagactcaatgctgagtaccagcagcggagccaccctcgccac
accactggaccttacctgccacccattctggatgcgagccccatgaccatgaggcgctca
gcgtccacactgtccccgcagcgccaccaggaggcgagcctgcgggagtacgggctgcag
aggccctcgcagggccaggacagggcccaccaccatcaccaccaccaccaccaccactgc
cacaagcgcagggagcgcgagaagaagcacaagtcactggagagggacagcacagagcag
accacctctgcacggggtacggtggcagaggtgacgggcgagcacgtgagtcgcgagcgt
gcacgggaccgggaccgaggccgcccgcacgagcgaaagcatcactcggtgtcgggtgag
cccaagacgcgctactactcatgcgagcgctatggcagcagggagcagggccatgcccac
tcagctggaccgagccgatccacctcacctggggaacaacatgagaccttacgcctcata
caggctggcaccactgccaggggcagcccagtcatcgtggcgtcaagcaccaacaccccc
aaccgcagccgccgccagctccctcagacgcccctcaccccacggccggccgtcgcctac
aaaacggcccactcgtctcccgtcaccatgccgtcggccggctcccgaccctgcgccggg
cccagctccgtctctggctccagctcgacccgtctgacgcgcggcctctcggagcacaac
tcgctgctggccgacagcggcagcccgtccccagtgcctgtcacccgcatcggctccgtg
cccagcctggctgccgagccgcgccaccctcttccgcaccccgaggagatggacgacttc
cacgacgccctgagcacctaccacggcgtgggccgctccacgcggacactgcccagtgcc
gctcacgccggggccggcgccggattgggatcctcggcccttgcccagtcgggccgcagc
ggggtgcccaacgggtaccactttgccctgggcatgagctcggcggccggctctggagcc
aggggcgcgggcgggtaccaggagactgagaaagaggactggtgctag
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integrated database retrieval system
