Alosa sapidissima (American shad): 121680861
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Entry
121680861 CDS
T11137
Symbol
depdc5
Name
(RefSeq) GATOR complex protein DEPDC5 isoform X1
KO
K20404
SEA/GATOR complex protein SEA1/DEPDC5
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
121680861 (depdc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
asad04131
]
121680861 (depdc5)
Membrane trafficking [BR:
asad04131
]
Autophagy
Other autophagy associated proteins
SEACIT/GATOR1 complex
121680861 (depdc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEPDC5_CTD
vWA_IML1
IML1_N
IML1_small
DEP
IML1_N_fung
Motif
Other DBs
NCBI-GeneID:
121680861
NCBI-ProteinID:
XP_041916344
LinkDB
All DBs
Position
13
Genome browser
AA seq
1612 aa
AA seq
DB search
MTIKTNKSYKLVVHKKGFGGSDDELMMNPKVFPHVALGDIVEIAHPNDEYSPLLLQVKSL
KEDLQKETISVDQTVAQAFKLRAYQDVIINIVDPKDVTLDLVELTFKDQYIGRGDMWRLK
KSLVSTCAYVTQKVEFAGIRAQASELWVKGEKVTCGYISEDTRVVFRSTSAMVYIFIQMS
CEMWDFDIYGDLYFEKAVNGFLSDLFTKWKEKNCSHEVTVVLFSRTFYSAKSMDEFPEIL
RGSIRQDHEGRFYEDFYRVVAQNERRDEWTSLLITIKKLFIQYPVLVRLRGADGFPCGQN
STAAQGNYLEAINLSFNVFDKHYINRNFDRTGQMSVVITPGVGVFEVNRLLMILTKQRMI
DNGIGVDLVCMGEQPLHAVPLFKLHNRTVPGDSRLGDDYNLPHWINHSFYTSKSQGNCSS
FTPRIKLAGRKAHAERAKSSKENSLGAPKDSENSLPIQVDYDAYDAQVFRLPGPSRASRS
TNFRSSRERETSGRKSWGSAEASGGGPGTGGVSPPTRGPGMGGPDEQRSLASDDSLGRVS
NILLIPRGPPAQYEVSSSLGYTSTREILEKMMESQRDWSAPGRFTVGSAESTLHVRPGGY
TPQRALINPFAPSRMPMKLTSNRRRWMHTFPVGPSGEPIQIHHQTRQNMVELQGSEQRDP
AHTSAELLELAYHEATGRRTASRHGGENGLYISGGIEEFSGSPSSSNSTGTPVNRGSSFE
DFSSGGPDPTLLLSAPPTVPSFCCTVGVDWKSLTTPACLPLTTDYFPDKQSLQNDYTEGC
YDLLPHTDLDRRDEDAPAMSAPQVFEEFICQRLMQGYQIIVQPNARKQAPPSSAPPLSSS
PLYSRGLVSRRRQEEEESVYWLSMGRTFHKVCLKDKIITVTRYLPKYPYESAQIQYSYSL
CPPHTEAHFLSCWVEFSHERLEEYKWNYLDQYICSAGSEDFSLIDSLKFWRTRFLLLPAG
GGARRVADSDGRWDVYGEGFGVPGSDWAPLDGFIRFVEGLNRIRRRHRSDRIIRKGGAMK
GLQVTGPLSPYPPEPIAPPLGKKGTSALSALLELDQTQKTLEEQQQQAAQHGVKVAGPLS
EASTGAMATTYVDSPRKDAGFLLDFIRSPRSSYIYHSQISADQPAASVAESGLTDKAASQ
SAAAGVGTQSSGDAASGVSTETSGHVGAGPLTLSSASTLLEILEAIKHPTTGVQLLPEQK
GLSPNSFISAEVVHWLVSTVEGVDTQGMAVDIMQKMLDEGLIAHASGDAMRTFVYGFYFY
RIVAEKDGERAPSTQLPPTGAGVWSTAVLEDFALFQRKWFEVAFVLEERRPCDLPAFLLP
WLPSRPASYASRHSSFSRSFGGRSQAAALLAAATVPEQKTVTLDVDVNNRSDRTEWCSCY
YHGNFSLNAAFEIKLHWMAVTAAVLFEMVQGWHRKAASCGFLLVPVLEVPFALPSYLYGD
PLRAHLFIPLNIQCLLREGSDNLFEGFEPETYWDRMQLFQEAILYRFGFVQDKFSASAFN
FPSENKPQYIHVTGTVFLQLPYSKRKYPSGQQRRRRNSTTSATQSLFGAEEHVGYYWAYN
TMLTKAWRTGLLGDERLGERLLRDFTDFCANKDNRLVAFWESCLEKMNSSAP
NT seq
4839 nt
NT seq
+upstream
nt +downstream
nt
atgactatcaagacaaacaaatcttacaagctggtggttcataaaaaaggctttggcgga
agtgatgatgagctgatgatgaaccccaaggtgttcccccacgtcgccctgggggacatc
gtagagatcgcacatcccaacgatgagtacagtcctcttctgctgcaagtaaagagcctg
aaagaagacctgcagaaagagacaatcagtgttgaccaaacagttgcccaggccttcaag
ctccgtgcttaccaggatgtcatcatcaacattgtggatcctaaggatgtcacccttgat
cttgtggagctcaccttcaaagatcagtacattggccgaggagacatgtggagactgaag
aagagtttggtcagcacctgtgcatacgtgacccagaaagttgagtttgctggaatcagg
gcccaggccagtgaactatgggtcaaaggtgaaaaggtcacatgtgggtacatcagtgag
gacaccagggtggtgttcaggtccacttcagcgatggtttacatcttcatccagatgagt
tgtgaaatgtgggactttgatatctatggagacctttactttgaaaaggccgttaatggt
ttcctgtcagatctctttaccaaatggaaggagaagaactgcagtcatgaggtgacggtg
gtgctgttctccagaactttctactcagccaaatctatggatgagtttcctgagatcctg
aggggttctatcagacaggaccatgagggacgcttctatgaggatttctacagggtggtg
gcccaaaacgaaagacgagatgagtggacatctctcctcattaccatcaagaaactcttc
atccagtaccctgtcctggtgcgcctcagaggagcagatggcttcccctgtggtcagaac
tccacagcagctcaggggaactatctggaagctattaacctctccttcaacgtgttcgac
aagcactacatcaaccgcaacttcgaccgcacagggcagatgtccgttgtgatcacaccg
ggcgtgggggttttcgaggtgaaccgcctgctcatgatcctcaccaaacagcgcatgatt
gacaatggtatcggagtggacctggtgtgcatgggagagcagccactccatgctgttcct
cttttcaagctgcacaaccggacagtaccaggagactccaggctgggggatgactacaac
ctgccccactggatcaaccacagtttctacacatccaaaagccaaggcaattgcagctct
tttacccccaggataaagctggcaggacgcaaggcccatgcagagagagccaagagcagt
aaagagaactccctgggagccccgaaggactcggagaacagcttgcccatccaggtggac
tatgatgcctatgacgcccaggtgttccggttgccagggccctctcgagcttcacgcagc
accaacttcaggtccagtcgtgagagggagaccagtggtcggaagagctggggttcggcc
gaggccagtggtggaggcccagggacaggaggggtgtcccccccaacgaggggccccgga
atggggggcccagacgagcagcggagcctggcatctgacgacagcttggggcgcgtgtcc
aacatcctcctgatcccgcgcggccctccagcccagtacgaggtcagcagctcactgggg
tataccagcacaagagagatcctggagaagatgatggagtcccagcgggactggagcgcc
ccaggtcgttttacggtgggcagcgccgagtccactctgcacgtgcgtccaggcggctac
acccctcagcgggcgcttattaaccccttcgccccctcacgcatgcccatgaagctcacc
tccaaccgccgccgctggatgcacaccttccctgtgggcccatcgggagaacccatccag
atccaccaccagacgcggcagaacatggtggaactgcaaggcagcgagcagagagacccc
gcccacacctctgcagagctgctggagctggcctatcacgaggccactggcaggagaaca
gcttctcgtcacggtggagagaatggcctttacatcagcggagggatagaggagttctct
ggcagcccctccagcagcaacagcactggaacacctgttaatcgtggatcctcattcgaa
gacttctcctctggtggtcctgacccaaccctcctgctgtctgcccccccgacagtgccc
agtttctgctgcacggtgggggtggactggaagtccctgaccacacccgcctgcctcccc
ctcaccaccgactacttccccgacaaacagtcgctccagaacgactataccgagggctgc
tacgacctgctaccccacacagacctggacaggcgtgatgaggacgctccagcgatgtcg
gcgcctcaagtgtttgaggagttcatctgtcagagactcatgcagggctaccagatcatc
gtccaaccaaacgccaggaagcaggctccgccttcatctgccccgcccctcagcagcagc
ccactctactctagaggtctggtgtctcggcgtaggcaagaggaggaggagagtgtgtac
tggctcagcatgggccgcacattccacaaagtctgcctgaaggacaagatcatcaccgtc
acacgctatctgcccaagtacccgtacgagtcggcacagatccagtacagctacagtctg
tgcccgcctcacactgaggcccatttcctgtcctgctgggtggagttcagtcacgagagg
ctggaggagtacaagtggaactacctggaccaatacatctgctcagccggctccgaggac
ttcagtctgattgactcgttaaagttctggcgcacacgcttcctactgctcccagccgga
ggaggggcgaggcgtgttgcggacagtgatggccgatgggatgtgtacggcgagggtttc
ggggtgccgggttctgattgggcaccgctggatggcttcatccgctttgtggaggggctg
aaccgcattcgccgccgacaccgctccgaccggatcatcaggaaaggaggagccatgaag
ggcttgcaggtgacaggccctctctctccctacccccctgagcccatagcgccccctctg
ggaaagaagggaacatcggctctctcagcactgctggaattggatcagacccaaaagact
cttgaggagcagcagcagcaggctgcccaacatggtgtcaaggtggccgggcccctcagt
gaagcctccaccggggccatggcaaccacctatgtcgacagcccccgaaaggacgccggc
ttccttctggattttatccggagccctcgctcctcatacatctatcactctcagatttca
gctgaccaaccagcagccagtgtggctgagtctgggctaactgacaaagcagccagccag
tcagctgctgcaggtgttggtactcagtccagtggagacgcagcctctggagtttccacg
gaaaccagtggccatgtcggggcaggaccgctcaccctctcctccgcttcaacgctcctg
gagatcctcgaggccatcaagcaccccaccactggagtgcagctcttgccagagcagaag
ggcctgtctcctaacagcttcatcagtgctgaggtggtgcactggctcgtcagcaccgtg
gagggagtggacacccagggaatggctgttgacatcatgcagaaaatgctggatgagggt
ctgatagcccatgcctcaggagatgccatgcgtacctttgtgtacggcttctatttctac
aggatagtggcagagaaggatggagagagggccccctccacccagcttccccccacaggt
gccggtgtgtggtcgacggcggtgctggaggacttcgctctcttccagaggaagtggttc
gaggtggccttcgtgctggaggagcggcgcccctgcgacctgcccgccttcctgttgcca
tggctacccagccggccggcgtcgtacgcaagtaggcacagttctttcagccgcagcttc
ggaggacgcagccaggccgccgcactgctagcagctgccaccgtgccggagcagaagacg
gtcaccttggacgtcgatgtgaacaatcgcagcgatcgcaccgagtggtgcagctgctat
taccatggcaacttctccctgaacgctgccttcgagatcaaactgcactggatggctgtc
acagcggcagtcctcttcgagatggtgcagggttggcacaggaaggcagcgtcgtgtggg
ttcctgttggtgcccgtgctggaggtgcccttcgctctgccctcctacctatacggagac
ccgctccgtgcccacctctttatccccctcaacatccagtgcctgctcagagagggatcc
gacaacctgtttgaaggatttgagcccgagacatactgggaccgtatgcaacttttccag
gaagccattctctacaggtttgggtttgtccaggataaattctcagcctcagctttcaac
ttcccgtcagagaacaagccccagtacatccatgtcacaggtacagtgttcctccagttg
ccctactctaagcgcaagtatcccagcgggcagcagcgacgccgacgcaactccaccacc
tcggccacccagagcctgtttggggccgaggagcacgtgggctactactgggcctacaac
accatgctgaccaaagcctggcgcacgggcctgctcggggacgagaggctgggcgagagg
ctgctccgagacttcaccgacttctgtgcaaacaaggacaaccggctggtggccttctgg
gagagttgcctggagaagatgaactctagtgctccataa
DBGET
integrated database retrieval system
