Alosa sapidissima (American shad): 121681005
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Entry
121681005 CDS
T11137
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121681005 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
asad03041
]
121681005 (prpf4)
Spliceosome [BR:
asad03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
121681005 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
PRP4
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_EML
Beta-prop_Aladin
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR41
Beta-prop_Vps41
Beta-prop_SCAP
eIF2A
Beta-prop_IFT140_1st
WD40_like
Beta-prop_WDR11_1st
Tricorn_2nd
DUF7779
Motif
Other DBs
NCBI-GeneID:
121681005
NCBI-ProteinID:
XP_041916536
LinkDB
All DBs
Position
13:complement(14098865..14105495)
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AA seq
507 aa
AA seq
DB search
MSDDEDVPMVKRSRIFYGSLEEKERERLGREGASGSGKDGVKAGIEAGNINISSGEVMDM
EERVSERQSEVLAEFERRKRARQITVSTDDAEVKACLRALGEPITLFGEGPADRRERLRN
ILSVVGPDALKKSKKEEEKAKRSQDECQQTWYHEGPTTLKDARLWIAHYSLPRAMKRLEE
ARAHKEIPESTRTVKQQELHKNLRNLNNFCSQIGDDRPISYCQFSPNSKLLVTASWSGLC
KLWNIPDCSLVRTLRGHDTNVGAICFHPKATLSLEESDINMASCAADGSVKLWSLDSDEP
VADIEGHSVRVARVAWHPSGRFLGTTCYDNSWRLWDLDAQEEILHQEGHSKGVHDLHFHP
DGSLAGTGGLDAFGRIWDLRTGRCVMFLEGHLKEIYSINFSPNGFNVATGSGDNTCKVWD
LRHRKCIYTIPAHQNLLSSVKFQPTDGHYLLTGAYDNMAKVWTHPGWSPLKTLAGHEGKV
MGVDLSPDGQFIATCSYDRTFKLWMSE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgacgaggacgtacccatggtgaagaggtctcgcatcttctatgggagtcta
gaggagaaggagcgagaacggttgggccgggaaggtgccagtgggtcagggaaagatggg
gtcaaagctggaatcgaggctggcaacatcaacatatctagtggtgaggtgatggacatg
gaggagcgtgtgagcgagagacagtcagaggtgctggctgaatttgagaggcgtaagaga
gcaagacagatcactgtatccactgacgatgcagaagtcaaagcttgcttacgagctctc
ggcgagccaatcacactctttggggaggggccagcagacagaagagagagattaaggaac
atcctgtctgtggtggggcctgatgcactgaagaagtccaagaaggaggaggaaaaagcc
aagcgaagccaggatgagtgtcagcagacgtggtatcacgagggccctactactctgaaa
gatgctcgactgtggatcgcccactactctctgcccagggcaatgaaacggctggaagag
gccagagctcataaggaaatcccagagtccacacgcacggtcaagcaacaggagctccac
aaaaatctcaggaatctaaataacttctgcagtcagattggagatgacagacctatttca
tactgtcagttcagtcccaactctaaactactcgttacagcctcatggagtggcttatgt
aaactctggaatatcccagactgcagcttggtccgcacactaaggggtcatgacaccaat
gtgggggcaatctgtttccacccaaaggccacgctatccctggaggagtcggacatcaac
atggcctcctgtgccgcggatggatcagtcaagctgtggagtctggacagtgacgagccc
gttgctgacatagaggggcactccgttagggtggcacgagtagcctggcatccatccgga
cgctttttgggtaccacctgttatgataactcctggcggctgtgggacttggatgcacaa
gaagaaattcttcaccaggagggccacagcaagggtgtccatgacctgcacttccaccca
gatggttctttggcagggactggtggtttagacgcgtttggtcgtatttgggacctgcgg
actggtcgctgcgtcatgttcctggagggtcatctgaaggagatctacagtatcaacttt
tctcccaatggctttaacgttgcaacaggaagtggggataacacctgcaaggtgtgggac
ttgcgtcacaggaagtgtatctacaccatccctgcccatcagaacctcctgtcttcagtc
aaattccagcccactgacggtcactacctgttgactggtgcatacgacaacatggcgaag
gtgtggacccaccctggctggtctccgctaaagacgttggcaggtcacgagggcaaggtg
atgggtgtggatctgtctccagacggccagttcatagcaacctgttcctatgaccgcacc
ttcaaactctggatgtcggagtaa
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integrated database retrieval system
