Alosa sapidissima (American shad): 121681130
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Entry
121681130 CDS
T11137
Symbol
pcdh1b
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
121681130 (pcdh1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
asad01009
]
121681130 (pcdh1b)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
asad04515
]
121681130 (pcdh1b)
Protein phosphatases and associated proteins [BR:
asad01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121681130 (pcdh1b)
Cell adhesion molecules [BR:
asad04515
]
Cadherins
Protocadherins
121681130 (pcdh1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_4
Sema4F_C
NnrU
Motif
Other DBs
NCBI-GeneID:
121681130
NCBI-ProteinID:
XP_041916641
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All DBs
Position
14:complement(24524442..24695355)
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AA seq
1231 aa
AA seq
DB search
MLVSSCTRCSRLMMSQRGGVMSQRRGATLVWITLLLLVSLCSAVTGIQYQLNEEMPPNTL
VGSLASDQGLPDTGHLYKLEVGTPYLRVDGKTGDIYTTEVPIDRETLKDCRYLFEGDPCY
LEFEVSITDLIKGQSPRLIEGRIEIMDLNDNTPQFSSPILSLSIPENTHVGTLFPIPTAT
DKDSGSNSIADYSLTAPLDAASLFSLQVAQDTDEKLPQLIVLGNLDREARDSYDLSIKVS
DGGQPARYSSALLRVTVTDVNDNPPRFERSHYEAELLENSPTGHSVLQVKANDSDMGPNG
EVTYSLHQASAMVQRLLNIDRTTGIIYVKGLVDREEVGALKFYVVAKDQGPPVKSSKVQV
TITIKDQNDNAPTITIRGIGLVTHEDGVANISEDTPVGTPVALVEVSDRDEGENAIVTCV
VAGDVPFQLTRASESANEKKRKYFLQTTTLLDYERIKDYRIEIVGVDSGNPALSSTNSLK
VQVTDTNDNAPIFSPSLFEVEFAEENQPGDKVLDVVASDADSGTNAELTYSIIMESSIKG
LFEINANTGEIRVLNQLDREHKEQYEFHVAAADKGVPSQRGTATVVVRVLDRNDNDPKFM
LSGYSFSVLENMPPLSPVGMVTVMDADKGDNAKVSLSVEPDNGKFVIQNGTGTILSSISF
DREKESTYTFRLKAVDGGDPPRSSYVGVTINVLDENDNAPYVTKPANSTYKFLLPLTSPE
THVERVEAEDMDTGPNAELEYSIIGGNPHGLFRISQSEGEITLTKEFTRKHNGLHRLVVR
VKDKGKPPRHTTALVHIFVNETLGNVTLVESLVGHSLYTPLETDIAGDPHEYLRLQQSNI
VYGSLAGLAGVILVIVVVVVIRHRLQKETKSGYQAGKKESKDLYAPKQGPKSSKSKKGKK
NKAPKPAKPLEEDEEASLQKGLKFNLMNDSVNDSPRIHLPLNYPPGSPDLGRHYRSNSPL
PSIQLQPQSPSASKKHQAVQDLPATNTFVGTGDNSSTGSDQYSDYRITANPPKYSNKQLP
HRRVTFSTTNQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPD
GSIGEMEHPENDLRSLPDVAMTGNCTRECTEFGHSDACWMPGQPSPTRAPKSAKGAAKLS
TFVPYQERDGPVTNGSPKPAPEERVSGGGSGVGGGSSKVAGVRFKPPYTSAYSAGGEPKD
CSLEEIPLSQATDYSSATTPPSQGSKREIYL
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgcttgtgtcgtcctgcacccgatgcagcagactgatgatgtctcagcgcggcggtgtc
atgtcgcagcgacggggcgccacgttggtgtggatcacgctgctgcttctggtctcgctc
tgttccgccgtcacgggcatccagtaccagttgaacgaggagatgccgcccaacacgctg
gtaggcagcctggcgtcggaccagggcctgccggacacgggtcacctctacaagctggag
gtcggcaccccttacctgcgcgtggacggcaagaccggggacatctacaccaccgaggtc
cccatcgacagggagaccctgaaggactgccgctatctgtttgaaggtgacccctgctac
ctggagttcgaggtatccatcaccgacctcatcaaaggccagagcccacgcctgattgag
ggccgcatcgagattatggacctgaacgacaacacgcctcagttctcctcgccaatcctc
tccctgtccatcccagagaacacgcacgtgggcacgctcttccccatccccaccgccacc
gacaaggactcgggctccaacagcattgctgactactcgctgaccgcgccactagatgcc
gccagcctcttcagcctgcaagtggcgcaggatacggatgagaagctgccgcagctcatc
gtactgggcaacctggaccgcgaggcgcgcgattcctacgacctcagcatcaaggtgtcg
gacggagggcagccggcccgctacagcagcgccctgctgcgcgtcaccgtcaccgacgtc
aacgacaacccaccccgcttcgagaggtcgcactacgaggccgagctgctggagaacagc
cccacaggtcactctgtcctgcaggtgaaagccaatgactctgacatgggcccaaatgga
gaggtgacatacagcctgcaccaggcctcagctatggtgcagaggcttctcaacatcgac
aggacgacgggcataatttacgtcaagggcctagtggaccgagaggaggtcggtgctctc
aagttctatgtggtggcgaaagaccaaggccctccggtcaagagctccaaggtccaggtg
accatcaccatcaaggatcagaacgacaacgcgcccaccatcactatccgcgggatcgga
ctggtgacccacgaggatggcgtggccaacatttcagaggacacgcccgtcggtacccct
gtggcgctggtggaggtgtcggaccgagatgagggggagaacgccattgtaacctgcgtg
gtggccggagatgtgccttttcagctgacccgagccagtgagtcggccaacgagaagaag
agaaagtacttccttcagacaacgacgctgctcgactacgagcgcatcaaggactacagg
atcgagatagtgggtgttgactcaggcaacccagctctgtcaagcacaaactcactgaaa
gtccaagtcacagacactaacgacaatgctcccatcttctccccatccttatttgaggtg
gaatttgctgaagagaaccaacctggtgataaagttctggatgtagttgcatctgatgca
gacagtggcaccaatgctgaactcacgtacagcataatcatggagtcgtccattaagggg
ctctttgaaatcaacgccaacactggcgagatccgtgttctgaaccagctcgatcgcgag
cacaaagaacagtacgagttccatgtggccgctgcagacaaaggtgtcccaagtcaacgg
gggacagccaccgttgtggtccgagtgctggaccgcaacgacaacgaccccaaattcatg
ctgagcggatacagcttctccgtccttgaaaacatgcccccgctcagtcctgtcggcatg
gtgaccgttatggatgcagacaagggcgataatgctaaagtgagtctgtcggtggagccg
gacaatgggaagtttgtcatccagaatggaacgggaacaatcttgtccagcatctccttc
gaccgggagaaggagagcacctataccttccggttgaaggcggtcgatggaggtgacccg
cctcgctcctcctatgtgggcgtcaccattaatgtcctggacgagaatgacaacgcccct
tacgtcaccaaacccgccaactccacgtacaagttcctccttccgctcacgagccctgag
actcacgtggagagggtggaggccgaggacatggacactgggcccaatgcagagctcgag
tacagtatcattggtggcaatccgcacggcctcttccgcatctcccaaagcgagggtgag
atcacgctgaccaaggagttcacccgcaaacacaacggccttcaccggctggtggtgcgc
gtcaaggacaagggcaagcctccacgccacaccaccgccctggtacacatcttcgtgaac
gagaccctcgggaatgtcaccctggtggagtcccttgtgggccacagcctgtacacgcca
ctggagaccgacatcgctggcgatccccacgagtatctgcgcctccagcaaagcaacatc
gtgtacggcagcctggctggcttggctggggtcatcctagtcatcgtggtcgtggtggtg
atcaggcatcggctccagaaggagaccaagagcggctaccaggcgggcaagaaagagagc
aaagacctctacgctccaaagcagggccccaagagcagcaagagcaagaagggcaagaag
aacaaggcgcccaagcccgccaagcccttagaggaggacgaggaggccagccttcagaaa
ggcctcaagttcaacctgatgaacgacagtgtcaacgacagccccaggatccacctgccc
cttaactaccccccgggcagtccggacctgggcaggcactaccgctccaactcccctcta
ccctccatccagcttcagccgcagtccccgtcagcctccaagaagcaccaggccgttcag
gacctccccgccaccaacacctttgtgggaacgggagacaacagctcgacagggtcggac
cagtattcggattacaggattacggccaacccaccgaaatacagcaacaaacagctgccg
caccgccgagtgaccttctccacaaccaatcaggcgcaggacctgcaggacccgtcccag
cacagctactacgacagcggcctggaggagtcagagacgcccagcagtaagagctcgtcc
ggcccgcgcatcgggcccctggccctgcccgaggaccactacgagaggaccacccccgac
ggcagcatcggagagatggaacaccccgagaacgacctcaggtctctccccgacgtggct
atgacgggcaactgcacgcgggaatgcacggaattcggccactcggacgcctgctggatg
cccggtcagccctcacctacccgcgcccccaaaagcgccaagggcgcggccaagctctcc
accttcgtgccttaccaggagcgagatggccccgtcaccaacggcagccccaagcccgcg
cccgaggagcgcgtcagcggtggcggtagtggcgttggcggaggaagctccaaagtggcc
ggcgtgcgcttcaaacccccctacaccagtgcctactcggcaggcggcgagcccaaagac
tgctccctggaggagatccccctgagtcaggcgaccgactactcctcggccaccacccca
cccagccagggctccaagagggagatctacctgtga
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