KEGG   Alosa sapidissima (American shad): 121681157
Entry
121681157         CDS       T11137                                 
Symbol
smu1a
Name
(RefSeq) WD40 repeat-containing protein SMU1 isoform X1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
asad  Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:asad00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:asad03041]
    121681157 (smu1a)
Spliceosome [BR:asad03041]
 Complex B
  Other components
   Complex B specific factors
    121681157 (smu1a)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd WD40_CDC20-Fz WDR55 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML WD40_Gbeta Beta-prop_WDR90_POC16_2nd LisH_TPL NBCH_WD40 Beta-prop_ACSF4 Beta-prop_RIG_2nd Ge1_WD40 WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_VPS8 Beta-prop_Nup120_160 Beta-prop_Vps41 Beta-prop_NWD2_C Beta-prop_Aladin Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_WDR41 Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_EIPR1 Beta-prop_BBS7 Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_DCAF12 WD40_RFWD3 Beta-prop_IP5PC_F VPS8_N TFIIIC_delta DUF7165 Phi29_Phage_SSB Beta-prop_NOL10_N
Other DBs
NCBI-GeneID: 121681157
NCBI-ProteinID: XP_041916670
LinkDB
Position
14:15290756..15298891
AA seq 537 aa
MSLEIESADVIRLIMQYLKENSLHRTLATLVEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLAQSLKWQQHQGLLPP
GMTIDLFRGKAAVKDVEDERFPTQLSRHIKFGQKSHVECSRFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCISFCKDSSQILSASFDQTIRIHGLKSGKLLKEFRGHASFVNEATFTPD
GHHIISASSDGTVKIWNVKTTECSNTFKSLGTSAGTDITVNNVLQLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCSLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVRTHTHYCSTVISKPKNPCGTHTHTHTLLFLYCHWHTGETLLWKNVVQCACSAEKR
NT seq 1614 nt   +upstreamnt  +downstreamnt
atgtctttggagattgaatccgccgatgtgatccgtctgatcatgcagtacctgaaggag
aacagtctccaccgcacgctggcaacgctggttgaggagaccaccgtgtcgttgaacacc
gtggacagtattgagagctttgtggcggacatcaacagcggccactgggacaccgtgctg
caggccatccagtcactcaagctacccgacaaaactctcatagacctctacgagcaggtg
gtgctggagttgattgagttgagagagctgggtgcggcacgttcccttctgcgccagacc
gaccccatgatcatgctgaagcagacccagcccgagaggtacatccacctggagaacctg
ctggccaggtcctacttcgacccccgagaggcgtatcccgatggcagcagtaaggagaag
aggagggcggctattgcccaggctctggctggggaagtcagcgtggtgcctccctcacgt
ttgatggctctactggcccagtctctgaagtggcagcagcatcagggtctgcttcctcct
ggtatgaccatcgatctgttcagaggcaaagctgccgtcaaagacgtggaagacgagaga
ttccccacacaactcagcaggcacatcaagtttggacagaagtcgcacgtggagtgctct
cggttctctcctgatggtcagtacctggtgaccgggtctgtggatggattcattgaggtg
tggaacttcaccactggcaagatcagaaaggatctgaagtaccaggctcaggataacttc
atgatgatggacgatgcagtgctctgcatgtgctttagcagagacacagagatgctggcc
acaggagctcaggacggcaagatcaaggtttggaagatccagagtggtcagtgcctgagg
cggtttgagcgcgctcacagcaaaggagtgacctgcatcagcttctgcaaggacagcagc
cagattctcagcgcatccttcgaccagaccatcaggatccatgggttaaagtcaggtaaa
cttctgaaagagttccgaggccatgcgtcctttgtaaacgaggcgaccttcacccctgac
ggacaccacatcatcagcgcatcatcagatggcaccgtgaagatttggaatgtgaagact
acagaatgctcaaacaccttcaagtcattaggaacgtctgctggaaccgacatcactgtc
aacaatgttctccagctgcccaagaacccagagcactttgttgtgtgcaatcgctccaac
accgtggtcattatgaacatgcaaggccagattgtgcgtagtttcagctcaggtaagcgt
gagggaggtgattttgtgtgctgctctctgtctccgaggggagagtggatctactgcgtg
ggagaagactttgtgctctactgtttcagcacagtcacaggcaaactggagagaaccctc
acggtacgtacacacacacactactgcagtacagtcatcagcaaaccgaagaacccttgc
ggtacacacacacacacacacacactactgtttctgtactgtcactggcacactggagag
acattgctatggaagaatgtggtgcagtgtgcttgctcagctgaaaagaggtag

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