Alosa sapidissima (American shad): 121681239
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Entry
121681239 CDS
T11137
Symbol
cngb1a
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-3
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
121681239 (cngb1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
asad04040
]
121681239 (cngb1a)
Ion channels [BR:
asad04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
121681239 (cngb1a)
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
121681239
NCBI-ProteinID:
XP_041916793
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Position
14:complement(33449766..33502348)
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AA seq
1246 aa
AA seq
DB search
MFTWVAKVVPQPPDPPGKLGEEEKPNPPPPEKKVVFKEEPPKAAPKPVKAKEEEVSEESS
AQSGVLTWLSSGFSSALPQPPGSPRLTRANTVDDASGASKADEGQGSGVIGWIVQGIGKV
VPQPDEKYKEETTAEPEETTEVTAAVEIQVKPSVQEMKDVPDAEPLPHIPVVELVSEDEG
CEEESKVGPPSVIEWLKHGFEKVVPQPVDSHSEVSVKKPTVASPPPETSKTEEESMSSHV
VGWFVSGFGRMIPQPVLKTAENGDAVHHVCLLQDPEDMVLEEVESDWDCDQKEHASAPCC
SAMDGDAPQADQAMSLLQALPQLIPQVLAMQEQEDAKTQAVAMASLEERLQQQRLEAARI
AEDLARQAAEMAVRQLEEDTGTPIAQLAEPDDGEQLPDIQEEENEEDPELQGLREDSEEE
NKTDSIVEVEEEPPEPEPEPEPEPERVPSPEPVAEEAPVTAQPQPASKEPTPPANEQEDT
TEGGCGEVIHAQPIVFVELVEEADVTAPSNIPQIIVPDDPEAMGISVPGKALQEDKQGLL
NVDEEMKQRSHSSVSHTNIAVSDRLQELVQLFKERTERVRDRLMDPDESDEESPSASPEK
KPASGAPPPPPPPPEETKDAPADEAPEEEEDKFFEFMGHQIKIPKVTLPPLPGWLRTIID
YRFPASIDPFTNLIYVLWLFFVTCAWNWNVWLIPVRWAFPYQTPDNIHWWLLADYTCDCI
YLMDILIFQPRLQFVRAGDIVCDKKDMRENYLKTFRFKMDVLSLFPFDLLYFKTGVNSLL
RFPRLLKYMAFFEFNDRLEAVMRKAYIYRVIRTTAYLLYSLHINACLFYYFCDYHGLGST
KWVYNGKGNKYIRCYYFAVKTLITIGGLPDPTSVYEITFQGVNYFVGVFAFSIMIGQMRD
VIGAATAGETYYRACMDSTIKYMTTYRIPHEVQNRVKTWYDYTWKSTGMLDELELLSQLP
LKMRLDIAVDVNFAIVSKVALFQGCDRQLIFDMLTRLKSVVYLPGDFVCKKGEIGREMYI
IKAGEVQVVGGPDNSIVFVTIRGGAVFGEISLLAGGGGNRRTANVKAHGFANLMILDKKD
LADILKNYPESQKLLRKKAKKMLTKDKKPEDEGGGKKAEEVITARPETPKLFKAALVVTE
KAGITGTFAKLKETYSGLEPHTSSSISPMPPPTPTRQRSPIPKTMEQEEDDTVAETADSS
MVIRMTPRQQGEEILSVEQGKADEGAAAKEKGKEGSKAKEVKKKKK
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgttcacctgggtggcaaaagtggttccccagcctcctgatccgccaggaaaacttggg
gaggaagagaagcccaatccaccacctccagagaagaaagtggtatttaaagaggaacct
ccaaaagcagctcctaaaccagtcaaggccaaagaggaagaagtatcagaagaatctagt
gcccagagtggagtgttgacctggctctccagtggcttttccagtgcactgccccagccc
ccgggcagcccgaggctgaccagggcaaacacggtggatgatgcatcgggtgccagtaag
gcagacgaaggccaaggcagtggagtcattggctggatcgtgcagggaataggaaaagtg
gttccccaaccagatgagaagtataaagaagaaacaacagctgaacctgaagaaaccaca
gaggttacagcagctgtggaaattcaggtgaagcccagtgtgcaggaaatgaaagatgtt
cctgatgctgagcctctcccccacatccccgttgtggagctcgtgtcagaagacgaagga
tgtgaggaggaaagcaaagtgggccctccaagtgtcattgagtggctgaagcatggcttc
gagaaggtggtgccacagccagtcgatagccactccgaggtctctgtgaagaagccaaca
gtggcatcccctcctcctgagacctccaagactgaggaggagtctatgagctcacatgtg
gtcggctggttcgtgtcaggttttggccgcatgatacctcagcctgtgctgaaaactgcg
gagaacggtgacgcagtacaccatgtgtgtctgctgcaggacccagaggacatggtcctg
gaggaggtggagtcggactgggattgtgaccagaaggagcacgcctctgccccatgctgc
tcagcgatggacggagacgcgccgcaggcggaccaggccatgtccctgctgcaggccctg
ccccagctcataccgcaggtgctggccatgcaggagcaagaggacgctaagacccaggcg
gtggcaatggccagtctggaggagagactgcagcagcagaggctggaggcggcccggatt
gcagaggatttagcccgacaggcggcagagatggccgtccggcagctggaggaggacacc
ggcacccccatagcacagttagcagagcccgacgacggagagcaactgcctgatatccag
gaggaagagaatgaggaagacccagagctgcaggggctgcgtgaggacagtgaggaggag
aataagactgacagcatagttgaagttgaagaagaaccgcctgagccagagcctgagcca
gagcctgagcctgagagagttccatcccctgagcctgtcgctgaagaggctccagtgacc
gcacagcctcagccggccagcaaagagcccacgccacccgctaatgaacaggaggacacc
acagagggaggttgtggagaggtcatccatgctcagccaattgtgtttgtggagcttgtg
gaggaagcggacgtaacagctccatcaaacataccacagatcatcgtccctgatgacccg
gaggccatgggcatcagtgtgcctggaaaagcgctccaggaggataaacagggcctcctc
aacgtggatgaagaaatgaagcagcggtcacactcctcagtgagccacaccaacattgcg
gtgagcgaccggctgcaggagctggtccagctgttcaaggagcgcacagagcgggtccga
gacagactcatggaccctgacgagtctgatgaggagagtccgtccgcctctcctgaaaag
aagcctgcatcaggggcacctcctcccccgcccccgccccccgaggagacaaaagacgcc
cctgctgatgaggcaccggaggaggaggaagataaattctttgaattcatgggccatcaa
atcaaaataccaaaagtcactcttcccccacttcctggttggcttagaaccatcattgac
taccgcttccctgctagcattgaccctttcaccaacttgatctacgtgttgtggctgttc
tttgtgacatgcgcctggaactggaacgtttggctcatccccgtccgctgggctttccca
tatcagacccctgacaacatccactggtggctcctcgctgactacacctgcgactgcatc
tacctcatggacattctaatcttccagcccagactccagtttgtccgtgctggagacatt
gtgtgtgataaaaaggacatgagagaaaactacttaaaaacgttcaggttcaagatggac
gttcttagtctgttccctttcgacctgctctacttcaaaacaggtgtcaactccctgctg
cgctttcctcgcctgcttaagtacatggcattcttcgagtttaatgaccgcttggaggca
gtcatgagaaaagcctacatctacagagtaatcagaaccactgcctacctgttgtactcc
ttgcatatcaatgcgtgtctgttttactacttctgcgactaccacggcctgggatccact
aagtgggtttacaatggcaaagggaacaagtacatacgctgttactactttgctgtgaag
accctgatcaccatcggtggtttgccagatcccacctcagtttatgaaattacctttcaa
ggggtcaattactttgtgggtgtgttcgccttttctatcatgattggtcagatgagagat
gtcattggagcagctacagcaggagagacgtactacagagcttgcatggacagcaccatc
aagtacatgacaacctatcgcattcctcatgaagttcagaaccgggtcaaaacctggtac
gactacacctggaagtctacaggcatgctggatgagctggaactgctttcgcagctgcca
cttaagatgcggcttgacattgccgtggatgtgaacttcgctattgtcagcaaagtggcc
ctctttcagggttgtgacagacagttaatctttgacatgcttacaaggctgaagtctgta
gtttatctcccaggagattttgtctgtaaaaagggtgagattggtcgtgaaatgtacatc
ataaaagcaggggaggtacaagtggttggtggtcctgataactctattgtgtttgtgacg
atcagaggaggagctgtgtttggagaaatcagcctcttagcagggggtggaggtaacaga
cgcacagcgaatgtcaaggctcatggctttgctaacctaatgatcctagataagaaggac
ctggctgacatcctgaagaactatcctgagtcccagaagctgcttcgcaagaaggccaag
aaaatgctgacaaaggataagaaacctgaagatgaaggtggaggcaaaaaagctgaagag
gtaataacagcacgcccggagacccctaagctcttcaaggccgccctggttgtgacggag
aaggctggcatcacaggcaccttcgccaagctgaaagaaacgtatagtgggctggagcca
cacacttcaagctccatatctcccatgccccctccaacgcccacacgccaacgctctcct
atcccaaagaccatggagcaggaggaggacgacacggtagccgagacggccgacagcagc
atggtcatacgcatgaccccgcgccagcagggcgaggagatcctgtccgtggagcagggc
aaagcagacgaaggggctgcagcgaaagagaaggggaaggaaggaagtaaagcaaaggaa
gtgaagaagaagaagaagtag
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