Alosa sapidissima (American shad): 121681267
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Entry
121681267 CDS
T11137
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03020
RNA polymerase
asad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121681267 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
121681267 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asad03021
]
121681267 (polr2b)
03400 DNA repair and recombination proteins [BR:
asad03400
]
121681267 (polr2b)
Enzymes [BR:
asad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121681267 (polr2b)
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
121681267 (polr2b)
DNA repair and recombination proteins [BR:
asad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
121681267 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
121681267
NCBI-ProteinID:
XP_041916840
LinkDB
All DBs
Position
14:complement(12763552..12780729)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEIEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KYIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPNRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPEVDEEMESTNRRYVKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMVS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgatcaagatgaagatatccagtacgatgaggatgaagatgagatcaccccggat
ctgtggcaggaagcctgctggatcgtcatcagctcgtactttgatgagaagggactggtg
cgtcagcagctggactcctttgatgagttcatccagatgtcggtgcagaggatcgtagag
gacgcaccgcccatagacctgcaggctgaggcccaacacacctcaggggagatagaggag
ccgccaaggtacctgttgaagttcgagcagatctacctgtccaagcccactcactgggag
agagatggagcaccctcgcctatgatgcccaacgaggcccgactccgcaacctcacgtat
tcggcccctctctatgtggacatcactaagaccatcattaaggagggtgaggagcagctg
cagactcagcaccagaagacgttcatcgggaagattcccatcatgctccgctccacctac
tgcctgctgagcggcctgaccgaccgtgacctgtgtgagctgaacgagtgccctctggac
cccggcggctactttatcatcaacggctccgagaaggtgctgatagcccaggagaagatg
gccactaacacggtgtacgtgtttgctaagaaggactccaagtacgcctacacagcagag
tgcaggtcctgtctggagaactcctctcgtcccaccagcaccatatgggtcagcatgatg
gcccgtggtggacagggtgtgaagaaaagtgcgattggtcagcgtatcgtgtccactctg
ccgtacatccggcaggaagtgcccatcatcatagtgttccgtgcgctgggctttgtgtcc
gacagagacatcctggagcacatcatctacgactttgacgaccccgagatgatggagatg
gtcaagccgtccctggacgaggcgtttgtgatccaggagcagaacgtggcgctgaacttc
attgggtcgcgtggtgccaagcccggcgtcaccaaggagcggaggatcaagtacgccaag
gaggtgctgcagaaggaggtgctgccgcatgtgggggtcagcgacttctgtgagaccaag
aaggcctacttcctggggtacatggtccatagactgctgttggctgctttgggtagacgt
gagcttgatgacagagatcactatggcaacaagagactggacttggctggacctctgctg
gcattcctcttccgaggaatgtttaagaacctgctgaaagagatccgcatctacgcacag
aagtacatcgaccgcgggaaagacttcaatctggagctggccatcaagacgcgcatcatc
tccgacggcctcaagtactccctcgccaccggcaactggggcgacgtcaagaaggcccat
caggccagggcaggggtgtctcaggtgttgaatcgcttgacctttgcgtcgaccttgtct
cacctgaggcgtgtgaactcccccatcggcagagacggaaaactggccaaaccccgacag
ctgcacaacacactgtggggcatggtgtgtccagccgagactccggagggtcatgctgtg
gggctagtgaagaacctggccctgatggcctacatctctgtgggttcccaaccgtccccc
atcctggagtttttggaggagtggagcatggagaacctggaggaaatctcccctgccgcc
atcgcagatgccactaagatctttgtgaacggctgctgggtgggaatacacaaggacccg
gaacagctgatgaacacactccgcaaactccgtcgccagatggacatcatcgtgtcagag
gtgtccatgatccgagacattcgtgagcgggagatcaggatctacactgacgcggggagg
atctgtcgccctctgctgatcgtggagaaacagaagcttctactcaagagacgccacatc
gaccagctcaaggagagagagtacaacaactacagctggcaggacctggttgcgagtggc
gtggtggagtatattgacactctggaggaggagactgtgatgttggccatgaccccagat
gacctccaggagaagggtgtggcctactgctccacatacacacactgtgagatccacccc
tccatgatcctgggagtgtgtgcctccatcatccccttccctgatcacaaccagtccccc
aggaacacgtaccagtctgctatggggaagcaggccatgggtgtgtacatcaccaacttc
cacgtgcgcatggacactctggcccacgtgctctactacccccagaagcccctggtcacc
acacgctccatggagtacctgcgtttcagagaactgcccgcaggcattaactccatcgtg
gccatcgcttcctacacggggtacaaccaggaggactcggtcatcatgaatcgctccgct
gtggaccgaggattcttccggtctgtgttctaccggtcctataaggagcaggagtctaag
aagggctttgatcaggaggagatctttgagaaacccaacagagaaacttgccagggcatg
cgtcacgccatctatgacaagctggacgacgatggcctgatcgcgccgggcgtgcgtgtg
tccggcgaggacgtgatcatcgggaagacggtcactctgccggaggtggacgaggagatg
gagagcaccaaccgccgctacgtcaagcgggactgcagcacgttcctgcgcaccagcgag
actggcatcgtggaccaggtcatggtcaccctcaaccaggaggggtacaagttctgcaag
atcagggtgcgctctgtgagaatccctcagattggagataagtttgccagtcgacatgga
cagaagggaacctgtgggatccagtacagacaagaggatatgccgtttacgtgtgagggc
atcacccctgacatcatcatcaatcctcacgccatcccctcaagaatgacagtcggccat
cttatcgagtgcctgcagggcaaggtgtctgccaataagggagagatcggcgatgccact
ccatttaatgacgcggtgaacgtgcagaaggtctccaacctgctctcagaatacggctat
cacctgagaggcaacgaggtgttgtataacggcttcactggcaggaagttgacctctcag
atattcatcgggccgacatactaccagcgtctcaaacacatggtggacgacaagatccac
tctcgtgcccgcggacctgtgcagatcctcaacagacagcccatggagggcaggtcacgt
gacggaggtctgcgtttcggggagatggagcgagattgtcagattgctcacggggcagcc
cagttcttgcgcgagcgtctgttcgaggcgtcggacccgtaccaggtgcacgtctgcaac
ctgtgcggcctcatggccatcgcaaacacacgcacacacacctacgagtgccgaggctgc
cgcaacaagacacagatttcgctggtacggatgccatacgcctgtaagctgctgttccag
gagctcatgtccatgagtattgcccctcgcatgatggtcagctag
DBGET
integrated database retrieval system
