Alosa sapidissima (American shad): 121681438
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Entry
121681438 CDS
T11137
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121681438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
asad03041
]
121681438
Spliceosome [BR:
asad03041
]
Complex B
Other components
Prp19-related factors
121681438
Complex C
121681438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
RRM_occluded
zf-CCCH_2
Nup35_RRM_2
zf-CCCH
zf-CCCH_4
RRM_3
RRM_YTH1
zf-CCCH_10
zf-CCCH_12
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
121681438
NCBI-ProteinID:
XP_041917119
LinkDB
All DBs
Position
14:23171486..23182484
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AA seq
423 aa
AA seq
DB search
MATSLGANTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
VRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLAVKDDMPKSDVNKEYYTQN
MEREIQGSDGTRPVGLLGKAPGHSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGLNDPVADKLLKRASAMPRLDTPDDKSITTLYIGGLG
DNITDSELRNHFYQFGEIRTITVVQRQQCAFIQFAARQAAELAAEKSFNKLIIGGRRLTV
KWGRSQGARGREKDQDGVSEMGNRLEPVPGLPGALPPPPAQEEEVPTNYFNLDPNTSSAV
MNMAMPPPPGIPNPPPPGFGPPLFHPMGPPPPPPMGLRPPGHIHYPSQDPQRMGTHATRH
AAE
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtccttaggagctaacacatataaccgacagaattgggaagatgcggacttc
cctatcctctgtcagacatgccttggtgaaaacccatacattcgaatgaccaaagagaag
tatggcaaagaatgcaagatctgtgctcgtcctttcacggtgttccgctggtgtcctggc
gtccgtatgcgcttcaagaagaccgaagtttgtcagacgtgcagcaagatgaaaaatgtc
tgccagacctgtctgctggacctggagtatggcctgccaattcaggttcgagacactggc
ctggccgttaaggacgacatgccgaagtcggacgtgaacaaggagtattacacgcagaac
atggagcgagagatccagggctctgatggcacccgtccggtgggcttgctgggcaaggcc
ccgggccacagtgacatgctgctgaagttggcgcgcaccacgccctactacaagaggaat
cggccacacatctgctccttctgggtgaagggagagtgcaagagaggagaggagtgcccc
tacaggcacgagaaacccacagatccagatgaccccctggcggatcagaacatcaaggac
cgctactatgggttaaacgacccggtggcagacaaactcctgaagcgagcgtctgccatg
ccgaggctagacacgccagacgacaagtccatcaccaccctctacataggaggcctggga
gacaacatcaccgactccgagctcaggaaccatttctaccagtttggcgagatccgcacc
atcacagtggtgcagaggcagcagtgtgccttcatccagtttgccgcgcggcaggcagca
gagctcgctgcggagaagtccttcaacaagctcatcattggtggacgcaggctcaccgtc
aaatggggcaggtcccagggagccagagggagagagaaggaccaagatggggtcagcgag
atgggaaacaggctcgagcccgtaccaggactccctggagcccttcccccaccccctgcc
caggaggaggaggtgcctaccaactacttcaacctggacccaaatacctcatcggcagtc
atgaacatggccatgccccctccccctggcatacccaaccccccacctcccggtttcgga
ccgccattattccatcccatggggccgcccccgcctccacccatgggcctcagacctcca
ggccacatccactacccttcccaggatcctcagcgcatgggcacccatgccactcgccac
gcggcagagtaa
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