Alosa sapidissima (American shad): 121681879
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Entry
121681879 CDS
T11137
Symbol
pkd1l2b
Name
(RefSeq) polycystic kidney disease protein 1-like 2 isoform X1
KO
K04988
polycystin 1L2
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
asad04040
]
121681879 (pkd1l2b)
04091 Lectins [BR:
asad04091
]
121681879 (pkd1l2b)
Ion channels [BR:
asad04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121681879 (pkd1l2b)
Lectins [BR:
asad04091
]
C-Type lectins
Others
121681879 (pkd1l2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PKD_channel
Polycystin_dom
PLAT
SUEL_Lectin
Ion_trans
Lectin_C
REJ
GPS
DUF5817
Motif
Other DBs
NCBI-GeneID:
121681879
NCBI-ProteinID:
XP_041917756
LinkDB
All DBs
Position
14:31690928..31719493
Genome browser
AA seq
2516 aa
AA seq
DB search
MVKGVLAEVVLLAILHIAATRGQDPTEALGCPEHQEPFDGSCYEFVAQQRAFQNAQRWCE
RGGGHLAFILNDETQQFLQRHIQPQQDWWIGLAPASSNLTLDSAAAEGTLSWLDGSDVSY
SNWASEPSIGARCGYILQGSGFQWEATDNCTQEMHFACEFETGKSMACANYNATLQCGSG
QVIEVDDSFFGRKTIHYCQGFTSSSITSSQEECSWVDVVHLVEGQCHGLQACQALADASS
FGEPCPGLGSYLSVEYHCKDGLHLLMGKLAAVFDNVTIQVKWLLHPFQGNLTCTLIAGDG
HIIDPYIPDESQASVVHQYSYPGVFTVGVECTTSEWHVTAQKTITIQEPLGEYGVVKCYS
MGQPMNSTNCKAFANNPLTIQVKLDAGSNVTYKVQRDGTLLASSSAAVGIVPHNITLGPE
EVQSLGPGCHRLTLLASNNVTAADPSTALEVCVLDPVQGLQASVSTQARPCPEAYLHITV
SLDYGAPAQLLFQISDSDNNTVQETREVDSGSLQVFNISTTVQGMIQVKVKAWNAFSATD
QDAGNTTVLCLPEIELLSNDAQNSTEEHLRIPRASVNIQMDPNKPNIGDPSVELEINGHG
NSDLHWECIGNCICSDTSNEKKIVIPKKCLQKPFEYVVYSLTVTKKTGNKEVSTATKCVT
LTPRREITVIIHCQDCNSINILNDLNLKVDCPGCQTIVWLIEDTSPVPAALSSCYSNGEK
RFREVANSVSSWAVPAATLQSAQQLITVIVYGTKDTGGGNIESGYSEFGITLPTPGASSV
TTPSTVTAASTVTTPSSVTIASSVTTSASVTSSASPGTTASPPSVLSCWTNRTAGDVLSP
FTFTCSVTQSFCSLAPCTYCLNTASGNYLYCGNNPSERSLFLPLGDRSNDYTLTVVVTLQ
NSARQTLNTTILVKVRDSVSESSVQDLQNLVSNQVAELQSQGQFTGAALAQMYQTVSSAL
NGGYNDEDKSARKELREQMVTNMFVAIESVPMGSPEEVQAVASAVAELTKQDDELTTDTQ
IQASSILSKLSKSLNSLPLPESNVNEKMLEASKPLIEAASNIIVVSAATDKQNEISEHLL
SAVDNVQSALLVGKKTSHGPTVITTPQISLYVNRMSPKNLVKQPFTIQNSSSSSASFAFP
PLGLSVVSSTPVDVRMMTFETNPFCWNTAQSINGTVGALSLTQQNGSLIPVANLTNEIEI
FLPRQLVAEVNSTFLDLGNFSTIVINVTSPNVSLVLKLDPSEDVSLHLLIGFQEYPNDTH
YEAQTYLPHDRDTQEERYTWVLSPRDMTIDEGVYYLLVRPVVGAGVNSTKVTVSITSIAA
QCVYWDELKLNWSDYGCRVGPLTTPLVTQCLCNHLTFFGSSFFVMPNVVDVSQTAQLFST
FVNNPVVVCFVGAIFLAYLVVVIWARRKDIQDTAKVKITVLGDNDPLAEYRYLLNISTGH
RRGASTSSQVTVTLLGTEGESEPHHLTDPDKPVFERGGVDMFLLTTPFSLGELQSIRLWH
DNSGNHPGWYINKVMVQDIETGQKWHFLCSSWLAIDMGECVLDKVFPVAREMDLKKFSNL
FYMKTVKDFRDGHIWFSVVSRPANSNFTCVQRVSCCFSLLLCTMLTSIMFYGVPTDPAEQ
TMDLGHIEFTWQQVMIGVQSSIIMFPINLLIVSIFRNTRPRERKSKKPVKDKSKADTCKQ
AKSGRVSPTQPPSPQSQHRDITPEAVTKDIRRIAQSLSKVMKNPLPRIDVTSGKNPDINT
LLSLVEDIIRQQNRAGDMFYTDSSKFTVTLEENPSSESPKKTSSDGQKGSLHSQYLYRQL
QHVEKDLGLLGPERFSNPDSYSQAVQQVRGMKGLLEPHLSSTSNGDHPSRSPSPEDSAEG
GDSSGGKRCCQGGLPWWFVFLGWLLVAATSGVSAFFTMLYGLKYGKERSVNWLISMLVSF
FESLFITQPLKVLGFAVFFALVLKKVDQEEYGDVPIEESVSNTGDPDAVRIARRDSTCSF
YQPPPPSDIERMRMNMIKEQKVFALIREILIYMGFMWMLLLVAYSQRDPNAFYLTRHIQQ
SFSSGITDSMSHKEVFTWANTSLLNNIFGQYPGFITDGNSKLIGNARLRQVRVQKDSCRI
ARSMELSVTDCHAPYSWEIEDRGSYGPGWNRTRDTNTSQAAASWQYLSQSRLRAHPIWGN
VALYRGGGFVVELGPDLTNATSALQYLFDNRWLDVYTRAIFAEFTVYNANINLFCIATLM
LETTAVGAFQYRSEIQTVRLYQSTGGLHIFVMASEVIYFLFILYYMYVQGKLMRQQKWAY
FKTKWNLLELAIIILSWSALSVFIKRTLLGNRDLELYQNNKDQYISFHETATVDAVLGYL
IAFLVLLSTIKLWHLLRLNPKLHLITSTLQRAWTDISGFLLVMTIMFLAYSIACNLMYGW
KLSSYRTLINAAQTMVSLQLGIFNYEEVLDYNPVLGAFLIGSCIIFMTFVVLNLFISVIL
VAFSEEQLHHKPSEEEEIVDLMLMKFCSLFGIKIKKKGEASGSFSATNNPAPSVIS
NT seq
7551 nt
NT seq
+upstream
nt +downstream
nt
atggttaaaggtgtccttgcagaggtggttctgctagcgattttacacatagccgcaacg
cgtggtcaagaccccacagaggcgctgggctgtccagagcaccaggagccttttgacggc
tcctgctatgagtttgtggcgcagcagcgcgccttccagaacgcccagcgctggtgcgaa
cgaggcggagggcacctggcgtttattctgaacgatgagacccagcagttcctccagcgg
cacatccagccccagcaggactggtggatagggctggccccggcgtccagcaacctcacc
ctggactcagctgcggcagagggaacactctcctggctcgatggctctgatgttagttac
tctaactgggcgagtgaaccctcaataggagccaggtgtggttacatcctccagggctct
ggctttcaatgggaggccacagacaactgcacccaagagatgcacttcgcctgtgaattt
gaaactgggaaatctatggcttgtgcaaactacaatgcaacacttcagtgtggctctggg
caggtgatagaggtggacgacagcttctttgggaggaagacgatacactactgccagggg
ttcacctcttcctcgatcacgtcctcacaagaggagtgcagctgggtggatgtagtacat
ttagtagaagggcagtgtcacggactgcaggcctgccaagctctggcagatgcatcatcc
tttggagaaccatgccctggtcttggaagctacttgtctgtggaatatcattgtaaagat
ggtcttcacctgctcatgggcaagttggctgctgtctttgacaacgtcacaatccaggtg
aagtggcttttgcacccgttccagggtaacctgacatgcacactcattgcaggggatggc
cacatcattgacccctacattcctgatgagtcacaggccagtgtggtgcatcagtacagc
tatccaggggtcttcactgtcggggtggagtgcaccaccagtgagtggcacgtcactgca
cagaagaccatcaccatccaggagccacttggggaatatggagtggtcaagtgctacagc
atgggccagccaatgaacagcacaaactgcaaagcctttgctaacaaccctcttacaatc
caggtcaaactggacgcaggaagcaatgtcacctacaaagttcagagagacggcacattg
ttggcctcgtcgtccgctgctgtgggcatagtccctcacaacatcaccctgggtccagag
gaggtgcagagcctgggtccaggctgtcatcggctgactctgctggcctctaacaacgtc
acggctgctgacccctccacagcgctggaggtgtgtgtattggatccggtgcaggggctg
caggcgtccgtgtccacccaggccaggccgtgccccgaggcgtatctccacatcaccgtc
tctctggactacggggcccccgcgcagctgctcttccagatatctgacagtgacaacaac
accgtccaggagacgagagaagtggacagtggcagtcttcaggttttcaacatctcaaca
accgtccaaggaatgatacaagtgaaggtcaaagcatggaatgcattctcagccacagat
caggatgcaggaaatacaacagtgctttgcctccctgagatagaactactgtcaaatgat
gctcaaaattcaacagaggagcatctgagaattccaagagccagtgttaatatccagatg
gaccctaataagcccaacattggtgacccaagcgtcgagcttgagatcaatggacatgga
aattcagatttacactgggaatgcattgggaattgtatatgttctgacacctctaatgag
aagaaaattgtgattcctaagaaatgcctacaaaaaccttttgaatatgtggtatactct
ctgactgttacaaagaagacaggaaataaagaagtgtcgacggcaaccaaatgtgtaacc
cttactccaaggagagaaataactgtcataatacactgtcaggactgtaactctatcaac
attctaaatgacctcaacctaaaagtggattgtccaggttgtcagacaatagtgtggtta
attgaggacacatctccagtccctgctgccctcagctcctgttacagcaatggtgaaaag
cgattccgagaggtagcgaactcagtcagctcatgggcagtcccagcagcgacccttcag
agtgcacagcagctcatcacagtcattgtttatggcacaaaagatacaggaggtggtaac
atagagtccggttatagtgaatttggcattacattacctacacccggtgcctcaagtgtg
accacaccctcaactgtgaccgcagcctcaactgtgaccacaccctcaagtgtgaccata
gcctcaagtgtgaccacatcagcctctgttacatcgtcagcctctcccgggacaactgca
agtccacccagtgtcctgtcatgctggacaaaccgcactgctggagatgttctttctcca
tttaccttcacttgcagtgtaacccagtccttctgtagccttgcaccttgcacctactgc
ctcaacactgccagtggcaattacctttattgtggtaataaccctagcgagaggtcactc
tttctgccactaggagacaggagtaatgactacaccctaactgtggttgtaactttgcag
aactcagctagacaaaccttaaacaccacaattctcgtcaaggtgagggactctgtttcg
gagtcctctgtgcaggatctccagaacctggtgtcaaatcaggtggcagagttacagagc
caaggccagtttacaggggcagccttagctcagatgtaccaaaccgtgtccagtgcattg
aatggaggctacaatgacgaggacaagagtgcaagaaaagagctcagagagcagatggtc
accaatatgtttgtagcaatagagagtgtccccatggggagcccagaggaggtgcaggca
gtcgccagtgctgtggccgaacttactaagcaggatgatgagctgaccacagacacacag
attcaggcaagcagtattttgtcaaagctcagcaagtccctcaactcacttccactccct
gaaagtaatgtaaatgagaagatgttggaagcatccaagcctctcattgaagctgctagt
aacatcattgtggtctcagcagcgacagataaacagaatgagatctccgagcacttactc
agtgctgtagacaacgtccagagtgcccttctggttgggaaaaagaccagccatgggccc
acagtcataaccactcctcagattagtttatatgtcaacagaatgtctccaaagaacctt
gtgaagcagccattcaccattcagaactctagctccagctctgccagctttgctttccca
cctttaggtctctctgttgtgtcatcaacgcccgtggatgtccggatgatgacctttgag
acaaacccattttgctggaatacagcgcagtccatcaatggcacagtgggggctctgtct
ctcacccaacagaatggctcccttatccctgttgctaacctgacaaacgagattgagatt
ttcttgccgaggcaattggttgctgaagtgaacagcacctttctggaccttggaaacttc
agcaccatcgtgatcaatgtgacgtcccctaacgtgtccctggtgctcaagctggacccc
tcagaagacgtctccttacatttgctaatagggttccaggagtaccccaacgacacacac
tacgaggcacaaacctacctgccgcatgacagagacacacaagaggagagatacacatgg
gtgttgagccccagggatatgaccatagatgaaggcgtatactaccttctggtgaggcct
gtggttggggcaggagtcaactctacaaaagtcacagtctccatcacgtccattgctgct
cagtgtgtgtactgggatgaactaaagctaaactggagtgactatggatgcagggttggc
cccctgactacacccctggtcacacagtgcttgtgcaaccacctgacgttctttgggagc
tccttcttcgtcatgcccaacgtggtggatgtgagccagacagctcaacttttcagcact
tttgtgaacaatccggtggtggtgtgctttgttggtgctattttcctggcctacctcgtg
gtggtaatatgggcacgacggaaggacattcaggacacagcaaaggttaagattactgtg
ctaggtgacaacgaccccctggcagagtacagatacctgctcaacatcagcactgggcac
cgacgcggagcttctacatcctcacaggtgacagtgactttgctgggcactgagggcgag
agtgaaccacaccatctgactgacccagacaagccagtgtttgagagaggcggggtagac
atgtttttactgaccacgccattctcgttgggcgaactgcagagtatcaggctctggcat
gacaactcagggaatcaccctggctggtacattaacaaagtgatggtgcaggacattgag
acggggcagaaatggcacttcctctgcagctcgtggctcgccatagacatgggggagtgt
gtcctggataaagtgtttcctgtagccagagaaatggacttaaagaaatttagcaatctg
ttctacatgaagacagtgaaagatttccgtgatggccacatctggttctctgtggtcagc
cgccccgcaaacagcaacttcacatgtgtgcagcgcgtctcctgctgtttctctctgcta
ctatgcaccatgctgaccagcatcatgttctatggtgtgcccacagatcctgctgagcag
accatggacttgggtcacattgagttcacttggcagcaagtgatgattggcgtccagagc
tccatcatcatgtttcccatcaacctcctcattgtcagcatcttcagaaacacacgcccg
cgggagaggaagtccaagaagcctgtaaaggacaagagtaaagcggacacctgcaaacag
gccaagagtggccgtgtgtcaccaacccagccgccctcccctcagagccagcacagggac
ataacaccagaagccgtaaccaaggacataagaagaatagcacagtcactctccaaggtg
atgaagaaccctcttcccaggatagatgtgacatctggcaaaaaccctgacatcaacacg
cttctttcactcgtggaagacatcatccggcagcaaaaccgtgcaggggacatgttttac
acagacagctccaagttcacggtcactttggaagagaacccttcctctgagagcccaaag
aaaacatccagtgacggccagaaaggcagccttcacagccagtacctctaccggcagctt
cagcacgtggagaaagatctgggcctgctggggcccgagcgcttctccaaccccgacagc
tacagccaggccgtgcagcaggtccggggcatgaaaggcctcctggagccccacctgtcc
tccacctccaacggagaccaccccagccgcagccccagccccgaggacagcgccgaggga
ggggacagtagtggtggcaagagatgctgtcagggaggcctgccctggtggttcgtgttc
ctgggctggcttctggtggcggcgacgagcggggtgtcggcgttcttcacgatgctgtac
gggttgaaatacgggaaagagcgctctgtcaactggctcatttccatgctggtgtccttc
tttgaaagcctttttatcactcagcctttgaaagtgcttgggtttgcagttttctttgcc
ctagtgctgaagaaagttgaccaggaggaatacggtgatgttcctattgaggaatcagtg
tcgaatacaggtgatcctgatgccgtacgtattgcacggagagacagcacatgcagtttc
taccagccgccaccaccttcagacattgagaggatgagaatgaatatgatcaaggaacag
aaagtgtttgccctcatcagagagattctcatatacatggggtttatgtggatgttactc
ttggttgcctatagtcagagggatccaaacgcgttctatctgacccggcacattcagcaa
agcttcagcagtgggatcacagactcgatgagccacaaggaggtgtttacgtgggccaac
acgtcgcttctgaacaacatttttggacaatatccaggcttcataacagatgggaattcc
aaacttattggcaacgcccgccttcgccaggtgagggtgcagaaagactcttgtcgcatt
gcccgctccatggaactgtcggtcacagactgccatgctccgtactcttgggagatagag
gacaggggctcctatggaccaggctggaatcgcacaagggatacaaacacctcccaggct
gctgcctcctggcaatacctgagccagtcccgactcagagctcatcccatatggggcaac
gtggccctgtacagaggaggaggctttgtggtggagctgggccctgacctgaccaatgct
acaagtgcgcttcagtacttgtttgacaacagatggctggatgtttacactcgtgctatc
tttgcggagttcactgtgtacaatgccaacatcaacctcttctgcattgctacactaatg
ctagaaacaacagctgtgggtgcattccagtaccgtagtgagatacagactgtccgtctc
tatcagtctacgggtggtttacacatttttgtcatggcctctgaggtcatctactttctt
ttcattctctactacatgtatgtccagggcaaactaatgaggcagcagaagtgggcttac
tttaagactaagtggaaccttcttgagctggccatcatcatcctcagctggagtgcactg
agtgtgtttatcaaaagaacattgctgggaaacagggacctggaattatatcaaaacaac
aaggaccagtacatcagtttccatgagactgccacagtggatgcggtgctgggctacctg
atcgccttcctggttctcttgtccaccattaagctgtggcacctcctgcggctcaacccc
aaactgcaccttatcacctccaccctgcaaagggcctggacagacatctcaggcttcctg
ctggtcatgaccatcatgtttctggcctactctattgcttgcaacctaatgtatggctgg
aagctgtcttcatacaggactctcattaatgcagcacagactatggtcagcctacagctt
ggtatcttcaattatgaagaggtgttagattataacccagttcttggtgcattcctaatt
ggctcttgcatcatcttcatgacctttgtggtgttgaatctctttatttccgtgatcctg
gtggcatttagtgaagagcaacttcaccataagccatctgaagaggaggagatagtggac
ctgatgctgatgaaattctgcagtctgtttgggatcaaaattaagaagaaaggagaagcg
agtggctccttctctgccactaacaatccagcaccatctgtcatatcgtaa
DBGET
integrated database retrieval system
