Alosa sapidissima (American shad): 121681898
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Entry
121681898 CDS
T11137
Symbol
sema6dl
Name
(RefSeq) sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like isoform X1
KO
K06842
semaphorin 6
Organism
asad Alosa sapidissima (American shad)
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Gene cluster
GFIT
Motif
Pfam:
Sema
PSI
Motif
Other DBs
NCBI-GeneID:
121681898
NCBI-ProteinID:
XP_041917791
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Position
14:complement(30987643..31004203)
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AA seq
1070 aa
AA seq
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MGSRPLFPLIFVLMASRLEAVSFPEDNVPIEVVDYHYSRQYPVFRGRPSGNESQHRLDFQ
LMTKIQDTLFIAGRDQVYLVSLRESYRNEIIPYRKLTWRSGQADRETCALKGKHRDECHN
FIKVLVPRNDDLVFICGTNGFNPMCRYYRLDNLEFDGEEISGLARCPFDAKQTNVALFAD
GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWLKEPHFLHAVEYGHYVYFFYREI
AAEHNNLGKAVYSRVARICKNDIGGSQRVLEKHWTSFVKARLNCSVPGESFFYFDVLQSI
TDIIDINGVPSVVGVFTTQLNSIPGSAVCAFSMADIEKVFRGRFKEQKTPDSVWTPFPEE
RLPKPRPGCCAGHSPAESFKSSMEFPDETLQFIKSHPLMDAAVPSIGDEPWFTKTRVRYR
LTALAVDSTAGPNKNYTVVFIGSEAGIVLKVLAKSSPFSLNDSVLLEEIDVFNRAKCLST
NEDDRRILSFHLDKDTHTLYVAFSSCVVRIPLSRCERHSSCQKSCIASRDPYCGWMPHGS
CEKLSPGVLTGYEQDVESGNTTRLGDCHEFLATTSAPDYKSYGNPTSDMELSSPSVTPVA
SGPIDSPKIIATQKPELFGSRKFVLQDDPATHSFDSFPGVPEGVWEVQSGESNQMVHMNI
LITCVFAAFLLGAFIAGMVVYCYRDAFLRKPRKIQKDAESAQSCTDSTGSFAKLNGLFDS
PVKEYQPNIDSPKLYTNLLSNGKDMPPGEDTKTMILSSQPPELAALPTPESTPVLQQKSM
QPLKNQWERAQGKVNGSHKEHFPSSPPPHTSVVGNVHIPSAVVLPNATHDQRSAYSTAEM
PRSERKVQNTEQSGSKSSRKDHRRSVDARNTLNDLLKHLNDGNGVPKAILADMPQKSRQH
LMLDPMVSMTEIPPKVPSREASLYSPSSSLPRNSPTKRVDVPTTPTTPTGPMSTLERQRA
YHRSSSQRHSISSMPKNMNSPNGVSVSRQPSMNRGGHMPPTPPSRMDSHGMPMGMHPQPS
VSRQSSYSGHGSLPRMGIKRTPSIKPDVPPKPNGFVPQTTQMRVVNKYSY
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgggcagcagacctttgtttccccttatctttgtcctgatggcatcacgtcttgaggct
gtcagttttcctgaggataatgttcccatagaagtggtggactaccactattcacggcag
tatcctgtgttcaggggccgcccttcaggcaatgaatctcaacacagactagactttcaa
ctgatgacaaaaatccaagacaccctcttcatcgctggcagagaccaggtctatttggtc
agcctgcgagaatcctacaggaatgaaatcattccttacagaaaattaacatggagatcg
ggccaagcggacagggagacgtgtgccttgaaagggaagcacagagatgaatgtcacaat
ttcatcaaagtgcttgtccccagaaacgatgatctggtcttcatttgcggcacaaatggc
ttcaacccaatgtgccgatattacaggctggataacctggaatttgatggggaagaaatc
agcggtttggcccgatgcccatttgatgccaagcagaccaacgttgccctctttgccgat
gggaagttgtactcggccacagtggcagacttcctggcgagtgacgctgttatttaccga
agcatgggggatggttctgccctaaggaccataaaatatgactccaagtggctgaaagag
ccacatttcctgcatgcagtggaatacgggcattatgtatacttcttctacagagaaata
gcagcagagcacaacaacctgggaaaggctgtgtattcccgtgtggcgcgcatatgcaag
aacgacattggcggctcccaaagagttctcgagaagcactggacctcgtttgtgaaggca
cgcctgaattgctctgtccctggggagtcctttttctattttgatgtccttcagtccatc
acggacatcattgacatcaacggggtcccctcagtggtcggagtgttcaccacacagctg
aacagcataccaggctctgcagtctgtgctttctcaatggcggacatcgagaaggtgttt
aggggaagatttaaagagcaaaaaacaccagactcagtttggacacctttccctgaagaa
agactgcccaagccaagacctggctgttgtgcggggcacagtccagcagagtccttcaaa
tcctccatggagtttccagatgagactctgcagttcatcaagtcccaccctctcatggat
gcggcagtgccttccattggagatgagccatggttcactaaaacacgagtgaggtaccga
ctgacagctctagcagttgacagtacagcaggacccaacaagaactacacagtggttttc
attggctcagaggctggaatcgtcctcaaagtgcttgccaagtcatctcctttctcccta
aatgacagtgtgctactggaggaaattgatgtcttcaaccgggcaaagtgcctatcaacc
aacgaggacgaccggcgcattctgtcattccacttggataaggacacacacactctttac
gtggctttctccagctgtgtggtccgcatccccctcagccgctgtgagcggcacagctcc
tgccaaaagtcgtgcattgcatcacgggatccatactgtgggtggatgccacatggttcc
tgtgagaagctctccccaggtgtcctcacgggctatgaacaagatgtggaatctggcaac
acaacgcgacttggtgactgtcatgaatttttggctactacatctgcgccagattacaaa
tcatatggcaacccaacctctgacatggagttgtcatcaccgtcagtcacgccagtggcc
tctggccccatagactcacccaaaatcattgccacacagaaacctgaactctttggttca
aggaaatttgtgctccaggacgacccggccacccattcttttgactcattcccaggtgtc
ccggagggtgtgtgggaggtgcagtcaggagagtccaaccagatggtccacatgaacatc
ctcatcacctgtgtgttcgctgctttcctgctgggcgccttcatagctggaatggtggtc
tactgctaccgcgatgctttcctacgcaagccaaggaagatccagaaggatgcagagtcg
gcccagtcctgcacagactccaccggcagctttgccaagctcaacggtttgttcgatagc
ccagttaaggagtatcagcccaacatcgactccccgaagctttacaccaacctcctgagc
aatgggaaggacatgcctcccggtgaagacacaaagacaatgatactaagcagccagccc
ccagagctggcagccctcccaacaccggagtctactccagtccttcagcaaaagagcatg
cagcctttaaagaaccagtgggagagggcccagggcaaggtcaacggatcccacaaggag
cactttccctcgagccctccaccacacacctctgttgttggaaatgttcatattcctagt
gctgttgttctccccaatgccactcatgaccagcggtctgcttacagcactgctgagatg
ccccgttctgaaaggaaagtccaaaacactgaacagtctggctctaaatcaagtagaaaa
gaccatcggcgctctgtggatgccaggaataccttaaacgaccttctgaagcacctgaat
gacggcaatggtgttccaaaagctattcttgcagacatgccacagaagtccaggcagcac
ttgatgctggaccccatggtcagcatgacggaaataccgccaaaagtccctagccgggag
gcctccttgtactctccttcctcctccctccccaggaacagcccaactaaaagggtggat
gtccccaccacccccaccacacccacagggcccatgagcactctggagaggcagcgagcg
taccaccggagctcctcacagaggcactccatttcatccatgcctaaaaacatgaactct
cccaatggggtgtctgtgtcacggcagcccagcatgaacaggggagggcatatgcctccc
actcctccgtcgaggatggactcgcacgggatgcccatgggcatgcatccgcagccctca
gtgtcccgacagagcagctacagtgggcatggctcactgccgcgcatgggtataaagagg
acaccttcaataaaacccgacgtgccccccaaacccaacggctttgtgccacagactaca
caaatgagggtggtaaacaagtacagttactag
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