Alosa sapidissima (American shad): 121682008
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Entry
121682008 CDS
T11137
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear RNA export factor 1-like
KO
K14284
nuclear RNA export factor
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03008
Ribosome biogenesis in eukaryotes
asad03013
Nucleocytoplasmic transport
asad03015
mRNA surveillance pathway
asad05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121682008
03015 mRNA surveillance pathway
121682008
03008 Ribosome biogenesis in eukaryotes
121682008
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121682008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121682008
03009 Ribosome biogenesis [BR:
asad03009
]
121682008
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121682008
mRNA cycle factors
Stress granule specific factors
121682008
Ribosome biogenesis [BR:
asad03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
121682008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_8
LRR_4
LRR_9
Motif
Other DBs
NCBI-GeneID:
121682008
NCBI-ProteinID:
XP_041917925
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Position
14:25533912..25560736
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AA seq
630 aa
AA seq
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MAAADDSRYYNEHDDRVGGPQFRNRKVRGPFRARMHSDHQGPRQRHRGGAGGFGPNPRSR
FDDDDGDINMGEGSQDGSLQRRYNPYGRPGRRGDGRLDRDRKGGGGSGHRGGGPSGVGGG
GGGGGAGGKKGWFKIIIPYGKKYEKKWLLDVLQNLCPVPFTPVKFSTEGHRVQFYIEDSS
TANALQKISRKITDAEGYKVIVISNPCAPPPXADLKPEEMESLKQCMSKRFDGSQQYLDL
NSIRTDPDLVSQNMEIILNRKHCMHAVLKIIEENIPELVSLNLSSNKLYKLDDMAELASK
AHNLKILNLSHNELRSERELDKVKGMKLVELWLDHNPLCDYFKDQPTYISAIRERFPRLL
KLDGHDLPPPIGFDVEAPTTIPPSKGSYFGSDDIKILISRFLQQYFSVYDSGDRQPLLDA
YHDGACFSLSTPFSAQNPARCSLGEYQKDSRNLKRLKDPTTRFRLVKHTRLNVVAFLNEL
PKTQHDTACFNVDVNTYTNTLLTFTVSGVFKEVDGKSRDSVRAFSRVFIAVPAGNSGLCI
VNDELFVRNATTEEIRRAFAAPAPTPSSSPVPTLSAPQQDMLNTFSLKSGMNLEWSQKCL
QDNEWDFDRAATVFTQMKAQGKIPDVAFIK
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccgacgactcccgctactacaacgagcatgatgaccgcgttgggggccct
cagttccggaaccggaaggtccggggtccgttccgggcccgcatgcactctgatcatcag
gggccgaggcaacggcacagaggtggagcaggggggttcggacccaacccccgctcccgg
tttgatgatgatgatggtgacatcaacatgggagaggggtcgcaggacggttcattacag
cgcagatataacccatatggccgcccaggtcgccgcggagatggccgacttgaccgtgat
cgtaaaggaggtggtggatctggtcacagaggaggagggccttcaggagtaggaggaggc
gggggaggaggaggagccggtgggaagaagggctggttcaagatcataatcccttatggg
aagaagtatgaaaaaaaatggctgcttgacgtgcttcagaatctctgtcctgtccccttc
acgccagtcaaattcagcacagaaggtcatagagtccagttctacattgaggattcctcc
actgccaacgcactacagaaaatctcccgcaagatcacagacgcagagggctacaaggtc
attgtgatctcaaacccctgtgcccccccccctnncgctgacctgaagccagaagagatg
gagagcctaaagcaatgtatgtccaagcgctttgatggctctcagcagtatctggatctc
aacagcatacgcacagacccagatctggtgtcccagaacatggaaataattctgaataga
aaacactgcatgcatgctgttctgaaaatcattgaagagaatattccagagttggtcagt
ctgaatctcagcagtaataagctttacaagttggacgatatggcggaactcgccagcaaa
gcgcacaacctgaagatcctcaatctgtcacacaacgagctgcggtcggagcgggagctg
gataaggtgaagggcatgaagctggttgagctgtggctggaccacaaccccctgtgcgac
tacttcaaggaccagcccacctacatcagtgccatcagggagcgattccctcgcttgctg
aagctggatggccatgatcttcctcctcctattgggtttgatgtcgaggcccccaccacc
attcctcccagcaagggtagttattttggttcagatgacatcaagatcctcatctcgcgg
ttcttacaacagtacttcagtgtgtatgactcaggagacagacagcctctgctggacgct
tatcatgatggcgcctgcttctcgctcagcacaccattcagtgcacagaaccctgccagg
tgtagtttgggggagtaccaaaaagacagcaggaatctcaagaggctgaaagatcccacc
actcgtttccgcctggtcaagcacacccgtctaaacgtggtggcgtttctgaacgagctg
cccaagactcagcatgacacagcgtgcttcaacgtagacgtcaacacgtacacgaataca
ttactaacgttcactgtgagtggagtcttcaaagaagtggatggtaaatccagagactcc
gtgcgggcgttctcaagagtcttcatcgctgttcctgctgggaattctgggttgtgcata
gtaaatgatgaactgtttgtgcggaatgccacgacggaggagattcggcgggcgtttgcg
gctccagctccgaccccgtccagcagtcccgtgcccaccctctcggccccccagcaggac
atgctaaacaccttctccctcaagtctggcatgaacctggaatggtcgcaaaaatgtctc
caggataacgagtgggactttgacagagctgccacagtcttcacacaaatgaaggctcaa
ggaaaaatcccagacgtcgcttttataaagtga
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