Alosa sapidissima (American shad): 121682037
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Entry
121682037 CDS
T11137
Symbol
pitx2
Name
(RefSeq) pituitary homeobox 2 isoform X1
KO
K04686
paired-like homeodomain transcription factor 2
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121682037 (pitx2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121682037 (pitx2)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
121682037 (pitx2)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Homeodomain
OAR
Homeobox_KN
XRCC4_C
Motif
Other DBs
NCBI-GeneID:
121682037
NCBI-ProteinID:
XP_041917971
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All DBs
Position
14:25919478..25929834
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AA seq
317 aa
AA seq
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MNSMKDPLTLEHLHHHHISGNKLTSLHHTPLAMASTLQPLQRSVDTKHRLEVHTVSDSSS
PESVEKEKGQSKNDDSSDDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIA
VWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYTYNNW
AAKGLTSASLSTKSFPFFNSMNVNPLSSQTMFSPPNSISSMSMTSSMVPSVTGVPGSSLN
SLNNLNNLSNQALNSGVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQ
NPASNLSACQYAVDRPV
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgaactctatgaaggatccgctgactttggaacacctacaccaccaccatatctccggg
aataaactcacttccctacaccacacgccacttgcgatggcttcaactctgcagccgttg
cagcggtcggtggacaccaagcaccggctagaggtgcacaccgtctcggacagttctagt
ccagaatccgtagaaaaagaaaaaggtcagagtaaaaatgacgactcctccgatgacccg
tccaagaagaagcggcagcgacgacagcgcacacatttcactagccagcagctccaggag
ctcgaggccaccttccagcggaaccgctacccggacatgtcaacgcgggaggagatcgct
gtctggacgaatctcacagaggccagagtgcgggtgtggttcaaaaatcgcagagcaaag
tggagaaaacgggagaggaatcaacaagcagagctttgcaagaacggcttcggccctcag
ttcaacggactcatgcagccctacgacgacatgtaccccggctacacatacaacaactgg
gccgccaagggcctcacgtccgcttccctgtccaccaaaagcttccctttcttcaattcc
atgaatgtcaatcccctctcctcgcagaccatgttctcccccccaaactccatctcctcc
atgagtatgacatccagtatggtcccttcggtgactggcgtgccgggatccagtctcaac
agtctcaacaacttgaacaaccttagcaaccaagctctgaattcgggagtccccacgccg
gcgtgcccatacgctccgccgacgcctccctacgtgtatcgggacacttgcaactccagt
ctggctagcctgagactgaaggcaaagcagcattcgagttttggatatgccagtgttcag
aacccggcctccaacctcagcgcgtgccagtacgctgtggatagaccggtctaa
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